{"id":"https://openalex.org/W4303856671","doi":"https://doi.org/10.21105/joss.04566","title":"PyMSM: Python package for Competing Risks and Multi-State models for Survival Data","display_name":"PyMSM: Python package for Competing Risks and Multi-State models for Survival Data","publication_year":2022,"publication_date":"2022-10-09","ids":{"openalex":"https://openalex.org/W4303856671","doi":"https://doi.org/10.21105/joss.04566"},"language":"en","primary_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.04566","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.04566.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":false,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},"type":"article","type_crossref":"journal-article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://joss.theoj.org/papers/10.21105/joss.04566.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079356686","display_name":"Hagai Rossman","orcid":"https://orcid.org/0000-0002-5613-8004"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Hagai Rossman","raw_affiliation_strings":["Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel","Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel","institution_ids":["https://openalex.org/I53964585"]},{"raw_affiliation_string":"Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026326472","display_name":"Ayya Keshet","orcid":"https://orcid.org/0000-0002-1841-7918"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Ayya Keshet","raw_affiliation_strings":["Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel","Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel","institution_ids":["https://openalex.org/I53964585"]},{"raw_affiliation_string":"Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075046749","display_name":"Malka Gorfine","orcid":"https://orcid.org/0000-0002-1577-6624"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Malka Gorfine","raw_affiliation_strings":["Department of Statistics and Operations Research, Tel Aviv University, Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Statistics and Operations Research, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]}],"institution_assertions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":0,"currency":"USD","value_usd":0,"provenance":"doaj"},"apc_paid":null,"fwci":0.0,"has_fulltext":true,"fulltext_origin":"pdf","cited_by_count":0,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":0,"max":60},"biblio":{"volume":"7","issue":"78","first_page":"4566","last_page":"4566"},"is_retracted":false,"is_paratext":false,"primary_topic":{"id":"https://openalex.org/T10136","display_name":"Statistical Methods and Inference","score":0.9898,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10136","display_name":"Statistical Methods and Inference","score":0.9898,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.985,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9465,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python","score":0.7688178},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.63517207}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7688178},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.63517207},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45612302},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.40566027}],"mesh":[],"locations_count":1,"locations":[{"is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.04566","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.04566.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":false,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true}],"best_oa_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.04566","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.04566.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":false,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},"sustainable_development_goals":[],"grants":[],"datasets":[],"versions":[],"referenced_works_count":9,"referenced_works":["https://openalex.org/W1986705681","https://openalex.org/W2005931737","https://openalex.org/W2052825782","https://openalex.org/W2460853713","https://openalex.org/W2965512201","https://openalex.org/W2976199659","https://openalex.org/W3097349486","https://openalex.org/W3121252309","https://openalex.org/W3139304239"],"related_works":["https://openalex.org/W656686947","https://openalex.org/W4318619745","https://openalex.org/W4243252198","https://openalex.org/W3160881136","https://openalex.org/W3021560500","https://openalex.org/W3007645298","https://openalex.org/W2584070953","https://openalex.org/W2166247150","https://openalex.org/W1906486629","https://openalex.org/W1825954513"],"abstract_inverted_index":{"Multi-state":[0],"survival":[1],"data":[2],"are":[3],"common,":[4],"and":[5,72,176,210,214],"can":[6,82,100,145,172],"be":[7,93,101,117,146,163,174],"used":[8,94,102],"to":[9,37,51,62,95,150,162],"describe":[10],"trajectories":[11],"in":[12],"diverse":[13],"applications":[14],"such":[15,43],"as":[16],"a":[17,29,33,39,45,78,104,113,129,132,187,195,204],"patient's":[18],"health":[19,122],"progression":[20],"through":[21],"disease":[22],"states,":[23,57],"pickups":[24],"during":[25],"the":[26,53,64,84,137,140,158],"workday":[27],"of":[28,66,136,184,216],"taxi":[30],"driver,":[31],"or":[32,47,61,124,206],"website":[34],"browsing":[35],"trajectory":[36,65,133],"name":[38],"few.When":[40],"faced":[41],"with":[42,179,194],"data,":[44],"researcher":[46],"clinician":[48],"might":[49],"seek":[50],"characterize":[52],"possible":[54,138],"transitions":[55],"between":[56],"their":[58,166,168],"occurrence":[59],"probabilities,":[60],"predict":[63,96],"future":[67,97],"observations":[68],"given":[69,119,165],"various":[70,211],"baseline":[71],"time-varying":[73],"individual":[74,106],"covariates":[75],"(features).By":[76],"fitting":[77,191],"multi-state":[79,192],"model,":[80],"we":[81],"learn":[83],"hazard":[85],"for":[86,108,148,190],"each":[87],"specific":[88],"transition,":[89],"which":[90,155,198],"would":[91],"later":[92],"paths.Predicting":[98],"paths":[99,143],"at":[103,125,134,157,203],"single":[105,205],"level,":[107,209],"example":[109],"predicting":[110],"how":[111,152],"long":[112],"cancer":[114],"patient":[115,130],"will":[116,128,160],"relapse-free":[118],"his":[120],"current":[121],"status,":[123],"what":[126],"probability":[127],"end":[131],"any":[135],"states.At":[139],"population":[141,207],"level":[142],"predictions":[144,202],"used,":[147],"example,":[149],"estimate":[151],"many":[153],"patients":[154,181],"arrive":[156],"emergency-room":[159],"need":[161],"admitted,":[164],"covariates.Moreover,":[167],"expected":[169],"hospitalization":[170],"duration":[171],"also":[173],"inferred,":[175],"provide":[177],"planners":[178],"anticipated":[180],"load.":[182],"Statement":[183],"needPyMSM":[185],"is":[186],"Python":[188],"package":[189],"models,":[193,201],"simple":[196],"API":[197],"allows":[199],"user-defined":[200],"sample":[208],"statistical":[212],"summaries":[213],"figures.Features":[215],"this":[217],"software":[218],"include":[219]},"cited_by_api_url":"https://api.openalex.org/works?filter=cites:W4303856671","counts_by_year":[],"updated_date":"2025-01-21T19:02:21.541743","created_date":"2022-10-09"}