{"id":"https://openalex.org/W3195350536","doi":"https://doi.org/10.1504/ijcbdd.2021.117182","title":"A new edge effect correction for sequence alignment","display_name":"A new edge effect correction for sequence alignment","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W3195350536","doi":"https://doi.org/10.1504/ijcbdd.2021.117182","mag":"3195350536"},"language":"en","primary_location":{"is_oa":false,"landing_page_url":"https://doi.org/10.1504/ijcbdd.2021.117182","pdf_url":null,"source":{"id":"https://openalex.org/S200215862","display_name":"International Journal of Computational Biology and Drug Design","issn_l":"1756-0756","issn":["1756-0756","1756-0764"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310317825","host_organization_name":"Inderscience Publishers","host_organization_lineage":["https://openalex.org/P4310317825"],"host_organization_lineage_names":["Inderscience Publishers"],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false},"type":"article","type_crossref":"journal-article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101712785","display_name":"A. Karami","orcid":"https://orcid.org/0009-0007-2280-1123"},"institutions":[{"id":"https://openalex.org/I4871159","display_name":"University of Mazandaran","ror":"https://ror.org/05fp9g671","country_code":"IR","type":"education","lineage":["https://openalex.org/I4871159"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Amirhossein Karami","raw_affiliation_strings":["Faculty of Mathematical Sciences, Department of Statistics, University of Mazandaran, Babolsar, 47416-13534, Iran"],"affiliations":[{"raw_affiliation_string":"Faculty of Mathematical Sciences, Department of Statistics, University of Mazandaran, Babolsar, 47416-13534, Iran","institution_ids":["https://openalex.org/I4871159"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090604723","display_name":"Afshin Fayyaz Movaghar","orcid":"https://orcid.org/0000-0003-1454-3551"},"institutions":[{"id":"https://openalex.org/I4871159","display_name":"University of Mazandaran","ror":"https://ror.org/05fp9g671","country_code":"IR","type":"education","lineage":["https://openalex.org/I4871159"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Afshin Fayyaz Movaghar","raw_affiliation_strings":["Faculty of Mathematical Sciences, Department of Statistics, University of Mazandaran, Babolsar, 47416-13534, Iran"],"affiliations":[{"raw_affiliation_string":"Faculty of Mathematical Sciences, Department of Statistics, University of Mazandaran, Babolsar, 47416-13534, Iran","institution_ids":["https://openalex.org/I4871159"]}]}],"institution_assertions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":0,"max":57},"biblio":{"volume":"14","issue":"3","first_page":"159","last_page":"159"},"is_retracted":false,"is_paratext":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9915,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9915,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9699,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9561,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.79242206},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.71727186},{"id":"https://openalex.org/keywords/value","display_name":"Value (mathematics)","score":0.61371505}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.79242206},{"id":"https://openalex.org/C118930307","wikidata":"https://www.wikidata.org/wiki/Q600590","display_name":"Tuple","level":2,"score":0.7191286},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.71727186},{"id":"https://openalex.org/C162307627","wikidata":"https://www.wikidata.org/wiki/Q204833","display_name":"Enhanced Data Rates for GSM Evolution","level":2,"score":0.65295684},{"id":"https://openalex.org/C2776291640","wikidata":"https://www.wikidata.org/wiki/Q2912517","display_name":"Value (mathematics)","level":2,"score":0.61371505},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.5402136},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.52606434},{"id":"https://openalex.org/C147581598","wikidata":"https://www.wikidata.org/wiki/Q729429","display_name":"Extreme value theory","level":2,"score":0.49367365},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.38572055},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36283824},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3264761},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.28805134},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.22981194},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.133591},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"is_oa":false,"landing_page_url":"https://doi.org/10.1504/ijcbdd.2021.117182","pdf_url":null,"source":{"id":"https://openalex.org/S200215862","display_name":"International Journal of Computational Biology and Drug Design","issn_l":"1756-0756","issn":["1756-0756","1756-0764"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310317825","host_organization_name":"Inderscience Publishers","host_organization_lineage":["https://openalex.org/P4310317825"],"host_organization_lineage_names":["Inderscience Publishers"],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false}],"best_oa_location":null,"sustainable_development_goals":[],"grants":[],"datasets":[],"versions":[],"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4245395944","https://openalex.org/W2562731034","https://openalex.org/W2143551613","https://openalex.org/W2143345456","https://openalex.org/W2138823233","https://openalex.org/W2101053337","https://openalex.org/W2023236823","https://openalex.org/W1989270116","https://openalex.org/W1979740464","https://openalex.org/W1789991335"],"abstract_inverted_index":{"Comparing":[0],"two":[1],"sequences":[2,61],"is":[3,18,24,35,52,68,115],"generally":[4],"based":[5,93],"on":[6,94],"their":[7],"local":[8,16],"score":[9,17],"and":[10],"the":[11,15,28,58,66,77,81,84,91,95,111],"corresponding":[12],"p-value.":[13],"Normally,":[14],"obtain":[19],"from":[20],"an":[21,53],"alignment":[22],"that":[23,110],"not":[25],"started":[26],"near":[27],"end":[29],"of":[30,60,73,83],"either":[31],"sequence.":[32],"So,":[33],"it":[34],"necessary":[36],"to":[37,56,70],"consider":[38],"this":[39,64],"fact":[40],"in":[41,99],"p-value":[42],"calculation.":[43],"The":[44,103],"edge":[45],"effect":[46],"correction":[47],"(EEC)":[48],"(finite":[49],"size":[50],"correction)":[51],"appropriate":[54],"way":[55],"improve":[57],"significance":[59],"alignment.":[62],"In":[63],"paper,":[65],"EEC":[67],"applied":[69],"a":[71,100],"method":[72,87,114],"evaluating":[74],"sequence":[75],"similarity,":[76],"h-tuple":[78,86,113],"method,":[79],"then,":[80],"results":[82],"corrected":[85,112],"are":[88],"compared":[89],"with":[90],"ones":[92],"extreme":[96],"value":[97],"theory":[98],"real":[101],"database.":[102],"receiver":[104],"operating":[105],"characteristic":[106],"(ROC)":[107],"curve":[108],"reveals":[109],"more":[116],"accurate.":[117]},"cited_by_api_url":"https://api.openalex.org/works?filter=cites:W3195350536","counts_by_year":[],"updated_date":"2024-12-07T05:39:12.193985","created_date":"2021-08-30"}