乐胖代购免代理版

{"id":"https://openalex.org/W2885383552","doi":"https://doi.org/10.1186/s12859-018-2307-y","title":"PIPEBAR and OverlapPER: tools for a fast and accurate DNA barcoding analysis and paired-end assembly","display_name":"PIPEBAR and OverlapPER: tools for a fast and accurate DNA barcoding analysis and paired-end assembly","publication_year":2018,"publication_date":"2018-08-08","ids":{"openalex":"https://openalex.org/W2885383552","doi":"https://doi.org/10.1186/s12859-018-2307-y","mag":"2885383552","pmid":"https://pubmed.ncbi.nlm.nih.gov/30089465","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/6083499"},"language":"en","primary_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2307-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2307-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310319965","https://openalex.org/P4310320256"],"host_organization_lineage_names":["Springer Nature","BioMed Central"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},"type":"article","type_crossref":"journal-article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2307-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072711119","display_name":"Renato Oliveira","orcid":"https://orcid.org/0000-0002-0111-8209"},"institutions":[{"id":"https://openalex.org/I4210161302","display_name":"Vale Technological Institute","ror":"https://ror.org/05wnasr61","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210161302"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Renato Renison Moreira Oliveira","raw_affiliation_strings":["Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil"],"affiliations":[{"raw_affiliation_string":"Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil","institution_ids":["https://openalex.org/I4210161302"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059781509","display_name":"Gisele Nunes","orcid":"https://orcid.org/0000-0003-3994-5135"},"institutions":[{"id":"https://openalex.org/I4210161302","display_name":"Vale Technological Institute","ror":"https://ror.org/05wnasr61","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210161302"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Gisele Lopes Nunes","raw_affiliation_strings":["Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil"],"affiliations":[{"raw_affiliation_string":"Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil","institution_ids":["https://openalex.org/I4210161302"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059183805","display_name":"Talv\u00e2ne G. L. Lima","orcid":null},"institutions":[{"id":"https://openalex.org/I4210161302","display_name":"Vale Technological Institute","ror":"https://ror.org/05wnasr61","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210161302"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Talv\u00e2ne Glauber Lopes de Lima","raw_affiliation_strings":["Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil"],"affiliations":[{"raw_affiliation_string":"Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil","institution_ids":["https://openalex.org/I4210161302"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048496084","display_name":"Guilherme Oliveira","orcid":"https://orcid.org/0000-0003-0054-3438"},"institutions":[{"id":"https://openalex.org/I4210161302","display_name":"Vale Technological Institute","ror":"https://ror.org/05wnasr61","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210161302"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Guilherme Oliveira","raw_affiliation_strings":["Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil"],"affiliations":[{"raw_affiliation_string":"Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil","institution_ids":["https://openalex.org/I4210161302"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000457683","display_name":"Ronnie Alves","orcid":"https://orcid.org/0000-0003-4139-0562"},"institutions":[{"id":"https://openalex.org/I4210161302","display_name":"Vale Technological Institute","ror":"https://ror.org/05wnasr61","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210161302"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Ronnie Alves","raw_affiliation_strings":["Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil"],"affiliations":[{"raw_affiliation_string":"Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil","institution_ids":["https://openalex.org/I4210161302"]}]}],"institution_assertions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072,"provenance":"doaj"},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072,"provenance":"doaj"},"fwci":0.876,"has_fulltext":true,"fulltext_origin":"pdf","cited_by_count":16,"citation_normalized_percentile":{"value":0.658768,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":90},"biblio":{"volume":"19","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":0.9988,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.9975,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/barcode","display_name":"Barcode","score":0.847952},{"id":"https://openalex.org/keywords/dna-barcoding","display_name":"DNA Barcoding","score":0.66270524},{"id":"https://openalex.org/keywords/identification","display_name":"Identification","score":0.6139983},{"id":"https://openalex.org/keywords/indel","display_name":"Indel","score":0.58511597},{"id":"https://openalex.org/keywords/sanger-sequencing","display_name":"Sanger sequencing","score":0.44875675},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.42014787}],"concepts":[{"id":"https://openalex.org/C2776841711","wikidata":"https://www.wikidata.org/wiki/Q856","display_name":"Barcode","level":2,"score":0.847952},{"id":"https://openalex.org/C141732470","wikidata":"https://www.wikidata.org/wiki/Q1154642","display_name":"DNA barcoding","level":2,"score":0.66270524},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6139983},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6102657},{"id":"https://openalex.org/C119054055","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"Indel","level":5,"score":0.58511597},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5611427},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.49362934},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.49030188},{"id":"https://openalex.org/C76818968","wikidata":"https://www.wikidata.org/wiki/Q181940","display_name":"Sanger sequencing","level":4,"score":0.44875675},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4444934},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.43868586},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4242014},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.42014787},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41927683},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41322625},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4110938},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.18776816},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16790426},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13621145},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12040588},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.08422974},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018388","descriptor_name":"Codon, Terminator","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018388","descriptor_name":"Codon, Terminator","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016384","descriptor_name":"Consensus Sequence","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016368","descriptor_name":"Frameshift Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016368","descriptor_name":"Frameshift Mutation","qualifier_ui":"","qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2307-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2307-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310319965","https://openalex.org/P4310320256"],"host_organization_lineage_names":["Springer Nature","BioMed Central"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6083499","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30089465","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false}],"best_oa_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2307-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2307-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310319965","https://openalex.org/P4310320256"],"host_organization_lineage_names":["Springer Nature","BioMed Central"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","score":0.55,"display_name":"Reduced inequalities"},{"id":"https://metadata.un.org/sdg/16","score":0.43,"display_name":"Peace, justice, and strong institutions"}],"grants":[{"funder":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","award_id":"443270/2015-5"}],"datasets":[],"versions":[],"referenced_works_count":39,"referenced_works":["https://openalex.org/W1971443418","https://openalex.org/W1974279211","https://openalex.org/W1996423252","https://openalex.org/W2017214689","https://openalex.org/W2021284638","https://openalex.org/W2023356179","https://openalex.org/W2039930928","https://openalex.org/W2050474297","https://openalex.org/W2071510336","https://openalex.org/W2072603644","https://openalex.org/W2096525273","https://openalex.org/W2097758022","https://openalex.org/W2099901798","https://openalex.org/W2103828958","https://openalex.org/W2106480442","https://openalex.org/W2118504484","https://openalex.org/W2121180999","https://openalex.org/W2127774996","https://openalex.org/W2128711701","https://openalex.org/W2132548846","https://openalex.org/W2136068873","https://openalex.org/W2136489776","https://openalex.org/W2142678478","https://openalex.org/W2146320430","https://openalex.org/W2152644728","https://openalex.org/W2157107905","https://openalex.org/W2157539385","https://openalex.org/W2167076445","https://openalex.org/W2272917943","https://openalex.org/W2279440129","https://openalex.org/W2335903885","https://openalex.org/W2383812421","https://openalex.org/W2588886743","https://openalex.org/W2739702018","https://openalex.org/W2765281411","https://openalex.org/W2806671706","https://openalex.org/W2949908331","https://openalex.org/W3121953277","https://openalex.org/W4245803912"],"related_works":["https://openalex.org/W4291786356","https://openalex.org/W2911724990","https://openalex.org/W2509660947","https://openalex.org/W2402613932","https://openalex.org/W2394007119","https://openalex.org/W2360712899","https://openalex.org/W2184079388","https://openalex.org/W2111456242","https://openalex.org/W2097619744","https://openalex.org/W2032317445"],"abstract_inverted_index":{"Taxonomic":[0],"identification":[1,33,41],"of":[2,91,121,132,135,171,201],"plants":[3],"and":[4,14,16,32,34,63,146,162,188,191,195,219,226,234,239],"insects":[5],"is":[6,57,115,123,139,156,175],"a":[7,28,68,85,108,124,176,199],"hard":[8],"process":[9],"that":[10,47,65,184],"demands":[11],"expert":[12],"taxonomists":[13],"time,":[15],"it's":[17],"often":[18],"difficult":[19],"to":[20,49,128,209],"distinguish":[21],"on":[22,222],"morphology":[23],"only.":[24],"DNA":[25,53,88],"barcodes":[26],"allow":[27],"rapid":[29],"species":[30],"discovery":[31],"have":[35],"been":[36],"widely":[37],"used":[38,116,211],"for":[39,87,152,168,179],"taxonomic":[40],"by":[42],"targeting":[43],"known":[44],"gene":[45],"regions":[46,197],"permit":[48],"discriminate":[50],"these":[51],"species.":[52],"barcode":[54],"sequence":[55,118],"analysis":[56,90],"usually":[58],"carried":[59],"out":[60],"with":[61,71,101,231],"processes":[62],"tools":[64,212],"still":[66],"demand":[67],"high":[69,96],"interaction":[70],"the":[72,130,142,205],"user":[73],"or":[74,119],"researcher.":[75],"To":[76],"reduce":[77],"at":[78,236],"most":[79,149,223],"such":[80],"interaction,":[81],"we":[82],"proposed":[83,107],"PIPEBAR,":[84],"pipeline":[86],"chromatograms":[89],"Sanger":[92],"platform":[93],"sequencing,":[94],"ensuring":[95],"quality":[97],"consensus":[98],"sequences":[99],"along":[100,230],"efficient":[102],"running":[103],"time.":[104],"We":[105],"also":[106],"paired-end":[109,181,217],"reads":[110,182],"assembly":[111],"tool,":[112],"OverlapPER,":[113],"which":[114],"in":[117],"independently":[120],"PIPEBAR.PIPEBAR":[122],"command":[125],"line":[126],"tool":[127,145,178],"automatize":[129],"processing":[131,169],"large":[133],"number":[134],"trace":[136],"files.":[137],"It":[138,155],"accurate":[140],"as":[141],"proprietary":[143],"Geneious":[144,161],"faster":[147,159,165],"than":[148,160,166],"popular":[150],"software":[151],"barcoding":[153,172],"analysis.":[154],"7":[157],"times":[158,164],"14":[163],"SeqTrace":[167],"hundreds":[170],"sequences.":[173],"OverlapPER":[174,203,220],"novel":[177],"overlapping":[180],"accurately":[183],"accepts":[185],"both":[186,193],"substitution":[187],"indel":[189],"errors":[190],"returns":[192],"overlapped":[194],"non-overlapped":[196],"between":[198],"pair":[200],"reads.":[202],"obtained":[204],"best":[206],"results":[207],"compared":[208],"currently":[210],"when":[213],"merging":[214],"1,000,000":[215],"simulated":[216],"reads.PIPEBAR":[218],"run":[221],"operating":[224],"systems":[225],"are":[227],"freely":[228],"available,":[229],"supporting":[232],"code":[233],"documentation,":[235],"https://sourceforge.net/projects/PIPEBAR":[237],"/":[238],"https://sourceforge.net/projects/overlapper-reads":[240],"/.":[241]},"cited_by_api_url":"https://api.openalex.org/works?filter=cites:W2885383552","counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":2}],"updated_date":"2024-12-12T03:05:36.619401","created_date":"2018-08-22"}