{"id":"https://openalex.org/W2803865599","doi":"https://doi.org/10.1186/s12859-018-2134-1","title":"SECIMTools: a suite of metabolomics data analysis tools","display_name":"SECIMTools: a suite of metabolomics data analysis tools","publication_year":2018,"publication_date":"2018-04-20","ids":{"openalex":"https://openalex.org/W2803865599","doi":"https://doi.org/10.1186/s12859-018-2134-1","mag":"2803865599","pmid":"https://pubmed.ncbi.nlm.nih.gov/29678131","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/5910624"},"language":"en","primary_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2134-1","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310319965","https://openalex.org/P4310320256"],"host_organization_lineage_names":["Springer Nature","BioMed Central"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},"type":"article","type_crossref":"journal-article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1186/s12859-018-2134-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057643028","display_name":"Alexander Kirpich","orcid":"https://orcid.org/0000-0001-5486-0338"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander S. Kirpich","raw_affiliation_strings":["Southeast Center for Integrated Metabolomics (SECIM), University of Florida, Gainesville, FL, 32611, USA"],"affiliations":[{"raw_affiliation_string":"Southeast Center for Integrated Metabolomics (SECIM), University of Florida, Gainesville, FL, 32611, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051125459","display_name":"Miguel Ibarra","orcid":null},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Miguel Ibarra","raw_affiliation_strings":["Southeast Center for Integrated Metabolomics (SECIM), University of Florida, Gainesville, FL, 32611, USA"],"affiliations":[{"raw_affiliation_string":"Southeast Center for Integrated Metabolomics (SECIM), University of Florida, Gainesville, FL, 32611, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036142033","display_name":"Oleksandr Moskalenko","orcid":null},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Oleksandr Moskalenko","raw_affiliation_strings":["University of Florida Research Computing, University of Florida, Gainesville, FL, 32611, USA"],"affiliations":[{"raw_affiliation_string":"University of Florida Research Computing, University of Florida, Gainesville, FL, 32611, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045346418","display_name":"Justin M. Fear","orcid":"https://orcid.org/0000-0002-2732-449X"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin M. Fear","raw_affiliation_strings":["Southeast Center for Integrated Metabolomics (SECIM), University of Florida, Gainesville, FL, 32611, USA"],"affiliations":[{"raw_affiliation_string":"Southeast Center for Integrated Metabolomics (SECIM), University of Florida, Gainesville, FL, 32611, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006238499","display_name":"Joseph E. Gerken","orcid":null},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph Gerken","raw_affiliation_strings":["Southeast Center for Integrated Metabolomics (SECIM), University of Florida, Gainesville, FL, 32611, USA"],"affiliations":[{"raw_affiliation_string":"Southeast Center for Integrated Metabolomics (SECIM), University of Florida, Gainesville, FL, 32611, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049572543","display_name":"Xinlei Mi","orcid":"https://orcid.org/0000-0002-2966-3217"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xinlei Mi","raw_affiliation_strings":["Department of Biostatistics, University of Florida, Gainesville, FL, 32611, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, University of Florida, Gainesville, FL, 32611, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101986639","display_name":"Ali Ashrafi","orcid":null},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ali Ashrafi","raw_affiliation_strings":["Southeast Center for Integrated Metabolomics (SECIM), University of Florida, Gainesville, FL, 32611, USA"],"affiliations":[{"raw_affiliation_string":"Southeast Center for Integrated Metabolomics (SECIM), University of Florida, Gainesville, FL, 32611, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070033946","display_name":"Alison M. Morse","orcid":"https://orcid.org/0000-0003-4286-6489"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alison M. Morse","raw_affiliation_strings":["Southeast Center for Integrated Metabolomics (SECIM), University of Florida, Gainesville, FL, 32611, USA"],"affiliations":[{"raw_affiliation_string":"Southeast Center for Integrated Metabolomics (SECIM), University of Florida, Gainesville, FL, 32611, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014437737","display_name":"Lauren M. McIntyre","orcid":"https://orcid.org/0000-0002-0077-3359"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lauren M. McIntyre","raw_affiliation_strings":["University of Florida Informatics Institute, University of Florida, Gainesville, FL, 32611, USA"],"affiliations":[{"raw_affiliation_string":"University of Florida Informatics Institute, University of Florida, Gainesville, FL, 32611, USA","institution_ids":["https://openalex.org/I33213144"]}]}],"institution_assertions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072,"provenance":"doaj"},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072,"provenance":"doaj"},"fwci":2.188,"has_fulltext":true,"fulltext_origin":"ngrams","cited_by_count":39,"citation_normalized_percentile":{"value":0.832949,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"19","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9894,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9838,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python","score":0.5838201},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.48022515},{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.4624624}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.72388875},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6030089},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.5838201},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5707307},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.48022515},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.46550968},{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.4624624},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.431165},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.26378328},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.25915128},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.17657948},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1268715},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000704","descriptor_name":"Analysis of Variance","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016002","descriptor_name":"Discriminant Analysis","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016018","descriptor_name":"Least-Squares Analysis","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":"","qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2134-1","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310319965","https://openalex.org/P4310320256"],"host_organization_lineage_names":["Springer Nature","BioMed Central"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":false,"landing_page_url":"https://doaj.org/article/a04b0155766245dd8182349dfa395722","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false},{"is_oa":true,"landing_page_url":"https://europepmc.org/articles/pmc5910624","pdf_url":"https://europepmc.org/articles/pmc5910624?pdf=render","source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":["European Bioinformatics Institute"],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5910624","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29678131","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false}],"best_oa_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2134-1","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310319965","https://openalex.org/P4310320256"],"host_organization_lineage_names":["Springer Nature","BioMed Central"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},"sustainable_development_goals":[{"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10","score":0.5}],"grants":[{"funder":"https://openalex.org/F4320310009","funder_display_name":"University of Florida","award_id":"Genetics Institute"},{"funder":"https://openalex.org/F4320310009","funder_display_name":"University of Florida","award_id":"HiPerGator"},{"funder":"https://openalex.org/F4320310009","funder_display_name":"University of Florida","award_id":"II Fellowship"},{"funder":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health","award_id":"U24 DK097209"}],"datasets":[],"versions":[],"referenced_works_count":67,"referenced_works":["https://openalex.org/W1540596182","https://openalex.org/W1559332","https://openalex.org/W1596515083","https://openalex.org/W1599871777","https://openalex.org/W1698155719","https://openalex.org/W1911778379","https://openalex.org/W1960881728","https://openalex.org/W1960974681","https://openalex.org/W1975594375","https://openalex.org/W1980270094","https://openalex.org/W1982185581","https://openalex.org/W1983113601","https://openalex.org/W1989755866","https://openalex.org/W1995051707","https://openalex.org/W2001619934","https://openalex.org/W2015795623","https://openalex.org/W2041282815","https://openalex.org/W2047028564","https://openalex.org/W2048060485","https://openalex.org/W2050106873","https://openalex.org/W2055027171","https://openalex.org/W2075109094","https://openalex.org/W2086391970","https://openalex.org/W2096576371","https://openalex.org/W2096863518","https://openalex.org/W2097360283","https://openalex.org/W2110065044","https://openalex.org/W2112440119","https://openalex.org/W2114754207","https://openalex.org/W2119821739","https://openalex.org/W2120488121","https://openalex.org/W2121574075","https://openalex.org/W2122598723","https://openalex.org/W2122825543","https://openalex.org/W2124911115","https://openalex.org/W2127670032","https://openalex.org/W2135046866","https://openalex.org/W2136482257","https://openalex.org/W2139381960","https://openalex.org/W2140541004","https://openalex.org/W2141407136","https://openalex.org/W2145147745","https://openalex.org/W2149309843","https://openalex.org/W2153635508","https://openalex.org/W2158863190","https://openalex.org/W2161645441","https://openalex.org/W2162023482","https://openalex.org/W2166600059","https://openalex.org/W2169718193","https://openalex.org/W2170148526","https://openalex.org/W2226402862","https://openalex.org/W2277322264","https://openalex.org/W2295124130","https://openalex.org/W2338241819","https://openalex.org/W2465692541","https://openalex.org/W2514574824","https://openalex.org/W2763572134","https://openalex.org/W2787894218","https://openalex.org/W2797925981","https://openalex.org/W2911964244","https://openalex.org/W3047398590","https://openalex.org/W4234698323","https://openalex.org/W4294541781","https://openalex.org/W4295660562","https://openalex.org/W4300029251","https://openalex.org/W4302067479","https://openalex.org/W585341442"],"related_works":["https://openalex.org/W4390569940","https://openalex.org/W4388685194","https://openalex.org/W4388422664","https://openalex.org/W4361193272","https://openalex.org/W4312407344","https://openalex.org/W4310278675","https://openalex.org/W2963326959","https://openalex.org/W2905433371","https://openalex.org/W2894289927","https://openalex.org/W2888392564"],"abstract_inverted_index":{"Metabolomics":[0],"has":[1],"the":[2,6,12,36,83,185],"promise":[3],"to":[4,27,35,40,70,219],"transform":[5],"area":[7],"of":[8,15,22,55,97,119,154,212],"personalized":[9],"medicine":[10],"with":[11,72,234],"rapid":[13],"development":[14],"high":[16],"throughput":[17],"technology":[18,44],"for":[19,91,109,192,201,231],"untargeted":[20],"analysis":[21,145,153,195],"metabolites.":[23],"Open":[24],"access,":[25],"easy":[26,202],"use,":[28],"analytic":[29],"tools":[30,106,172,218],"that":[31,64,100],"are":[32,101],"broadly":[33],"accessible":[34],"biological":[37],"community":[38],"need":[39],"be":[41],"developed.":[42],"While":[43],"used":[45],"in":[46,111],"metabolomics":[47,50,193,232],"varies,":[48],"most":[49],"studies":[51,233],"have":[52],"a":[53,95,116,210],"set":[54,96,118,211],"features":[56],"identified.":[57],"Galaxy":[58,75,186,225],"is":[59,94],"an":[60],"open":[61],"access":[62],"platform":[63,187],"enables":[65,189,227],"scientists":[66],"at":[67],"all":[68],"levels":[69],"interact":[71],"big":[73],"data.":[74,237],"promotes":[76],"reproducibility":[77],"by":[78],"saving":[79],"histories":[80],"and":[81,107,127,168,176,180,188,204,209],"enabling":[82],"sharing":[84],"workflows":[85,191],"among":[86],"scientists.":[87],"SECIMTools":[88,183],"(SouthEast":[89],"Center":[90],"Integrated":[92],"Metabolomics)":[93],"Python":[98],"applications":[99],"available":[102],"both":[103],"as":[104],"standalone":[105],"wrapped":[108],"use":[110,203],"Galaxy.":[112],"The":[113,224],"suite":[114],"includes":[115],"comprehensive":[117],"quality":[120],"control":[121],"metrics":[122],"(retention":[123],"time":[124],"window":[125],"evaluation":[126,130],"various":[128],"peak":[129],"tools),":[131],"visualization":[132],"techniques":[133],"(hierarchical":[134],"cluster":[135],"heatmap,":[136],"principal":[137],"component":[138],"analysis,":[139,152],"modular":[140],"modularity":[141],"clustering),":[142],"basic":[143],"statistical":[144],"methods":[146,162],"(partial":[147],"least":[148],"squares":[149],"-":[150],"discriminant":[151],"variance,":[155],"t-test,":[156],"Kruskal-Wallis":[157],"non-parametric":[158],"test),":[159],"advanced":[160,169],"classification":[161],"(random":[163],"forest,":[164],"support":[165],"vector":[166],"machines),":[167],"variable":[170],"selection":[171,177],"(least":[173],"absolute":[174],"shrinkage":[175],"operator":[178],"LASSO":[179],"Elastic":[181],"Net).":[182],"leverages":[184],"integrated":[190],"data":[194,207,229],"made":[196],"from":[197],"building":[198],"blocks":[199],"designed":[200],"interpretability.":[205],"Standard":[206],"formats":[208],"utilities":[213],"allow":[214],"arbitrary":[215],"linkages":[216],"between":[217],"encourage":[220],"novel":[221],"workflow":[222],"designs.":[223],"framework":[226],"future":[228],"integration":[230],"other":[235],"omics":[236]},"cited_by_api_url":"https://api.openalex.org/works?filter=cites:W2803865599","counts_by_year":[{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":3}],"updated_date":"2025-01-18T18:04:15.955296","created_date":"2018-06-01"}