乐胖代购免代理版

{"id":"https://openalex.org/W2946017187","doi":"https://doi.org/10.1145/3316781.3317764","title":"AlignS","display_name":"AlignS","publication_year":2019,"publication_date":"2019-05-23","ids":{"openalex":"https://openalex.org/W2946017187","doi":"https://doi.org/10.1145/3316781.3317764","mag":"2946017187"},"language":"en","primary_location":{"is_oa":false,"landing_page_url":"https://doi.org/10.1145/3316781.3317764","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false},"type":"article","type_crossref":"proceedings-article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051680668","display_name":"Shaahin Angizi","orcid":"https://orcid.org/0000-0003-2289-6381"},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shaahin Angizi","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Central Florida, Orlando, FL"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Central Florida, Orlando, FL","institution_ids":["https://openalex.org/I106165777"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079380128","display_name":"Jiao Sun","orcid":"https://orcid.org/0000-0002-7480-025X"},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiao Sun","raw_affiliation_strings":["Department of Computer Science, University of Central Florida, Orlando, FL"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Central Florida, Orlando, FL","institution_ids":["https://openalex.org/I106165777"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100441789","display_name":"Wei Zhang","orcid":"https://orcid.org/0000-0003-3605-9373"},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei Zhang","raw_affiliation_strings":["Department of Computer Science, University of Central Florida, Orlando, FL"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Central Florida, Orlando, FL","institution_ids":["https://openalex.org/I106165777"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047916979","display_name":"Deliang Fan","orcid":"https://orcid.org/0000-0002-7989-6297"},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Deliang Fan","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Central Florida, Orlando, FL"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Central Florida, Orlando, FL","institution_ids":["https://openalex.org/I106165777"]}]}],"institution_assertions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":17.174,"has_fulltext":true,"fulltext_origin":"ngrams","cited_by_count":55,"citation_normalized_percentile":{"value":0.999057,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.995,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9884,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/application-specific-integrated-circuit","display_name":"Application-specific integrated circuit","score":0.5636761},{"id":"https://openalex.org/keywords/in-memory-processing","display_name":"In-Memory Processing","score":0.4534663}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8305974},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.6304814},{"id":"https://openalex.org/C80469333","wikidata":"https://www.wikidata.org/wiki/Q189088","display_name":"Von Neumann architecture","level":2,"score":0.62226117},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.60569334},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.6002144},{"id":"https://openalex.org/C77390884","wikidata":"https://www.wikidata.org/wiki/Q217302","display_name":"Application-specific integrated circuit","level":2,"score":0.5636761},{"id":"https://openalex.org/C123593499","wikidata":"https://www.wikidata.org/wiki/Q6008583","display_name":"In-Memory Processing","level":5,"score":0.4534663},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.40889758},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.37393343},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.27418646},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.14083737},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.12532419},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.0},{"id":"https://openalex.org/C194222762","wikidata":"https://www.wikidata.org/wiki/Q114486","display_name":"Query by Example","level":4,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C164120249","wikidata":"https://www.wikidata.org/wiki/Q995982","display_name":"Web search query","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"is_oa":false,"landing_page_url":"https://doi.org/10.1145/3316781.3317764","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.87,"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy"}],"grants":[],"datasets":[],"versions":[],"referenced_works_count":24,"referenced_works":["https://openalex.org/W1606129576","https://openalex.org/W2010202670","https://openalex.org/W2015831381","https://openalex.org/W2020704360","https://openalex.org/W2103441770","https://openalex.org/W2124985265","https://openalex.org/W2128830021","https://openalex.org/W2143171378","https://openalex.org/W2152142824","https://openalex.org/W2157539385","https://openalex.org/W2214682759","https://openalex.org/W2330100020","https://openalex.org/W2396622873","https://openalex.org/W2526975281","https://openalex.org/W2536491920","https://openalex.org/W2577617591","https://openalex.org/W2755757278","https://openalex.org/W2765884744","https://openalex.org/W2766489088","https://openalex.org/W2789784730","https://openalex.org/W2809195560","https://openalex.org/W2809295488","https://openalex.org/W2870561134","https://openalex.org/W2900164285"],"related_works":["https://openalex.org/W4322580884","https://openalex.org/W3190662310","https://openalex.org/W2888459714","https://openalex.org/W2798440551","https://openalex.org/W2794767707","https://openalex.org/W2518875864","https://openalex.org/W2135248929","https://openalex.org/W2092690310","https://openalex.org/W1507878993","https://openalex.org/W1493624592"],"abstract_inverted_index":{"Classified":[0],"as":[1,13,82],"a":[2,14,89,100,127],"complex":[3],"big":[4],"data":[5,22,130],"analytics":[6],"problem,":[7],"DNA":[8,62,142],"short":[9,63,94,167],"read":[10,64,95,105,168],"alignment":[11,65,72,106,169],"serves":[12],"major":[15],"sequential":[16],"bottleneck":[17],"to":[18,33,60,88,144,151,178,183],"massive":[19],"amounts":[20],"of":[21,141],"generated":[23],"by":[24,175],"next-generation":[25],"sequencing":[26],"platforms.":[27],"With":[28],"Von-Neumann":[29],"computing":[30],"architectures":[31],"struggling":[32],"address":[34],"such":[35],"computationally-expensive":[36],"and":[37,53,70,85,114,120,132,139,150,155],"memory-intensive":[38],"task":[39],"today,":[40],"Processing-in-Memory":[41],"(PIM)":[42],"platforms":[43],"are":[44],"gaining":[45],"growing":[46],"interests.":[47],"In":[48],"this":[49],"paper,":[50],"an":[51,68],"energy-efficient":[52],"parallel":[54,104,115],"PIM":[55],"accelerator":[56],"(AlignS)":[57],"is":[58,123],"proposed":[59,112],"execute":[61],"based":[66],"on":[67],"optimized":[69,125],"hardware-friendly":[71],"algorithm.":[73],"We":[74],"first":[75],"develop":[76],"AlignS":[77,122,164,188],"platform":[78],"that":[79,108,135,163],"harnesses":[80],"SOT-MRAM":[81],"computational":[83],"memory":[84],"transforms":[86],"it":[87],"fundamental":[90],"processing":[91,140],"unit":[92],"for":[93],"alignment.":[96],"Accordingly,":[97],"we":[98],"present":[99],"novel,":[101],"customized,":[102],"highly":[103],"algorithm":[107],"only":[109],"seeks":[110],"the":[111,147,166,179],"simple":[113],"in-memory":[116],"operations":[117],"(i.e.":[118],"comparisons":[119],"additions).":[121],"then":[124],"through":[126],"new":[128],"correlated":[129],"partitioning":[131],"mapping":[133],"methodology":[134],"allows":[136],"local":[137],"storage":[138],"sequence":[143],"fully":[145],"exploit":[146],"algorithm-level's":[148],"parallelism,":[149],"accelerate":[152],"both":[153],"exact":[154],"inexact":[156],"matches.":[157],"The":[158],"device-to-architecture":[159],"co-simulation":[160],"results":[161],"show":[162],"improves":[165],"throughput":[170,192],"per":[171,173,193],"Watt":[172],"mm2":[174],"~12\u00d7":[176],"compared":[177],"ASIC":[180],"accelerator.":[181],"Compared":[182],"recent":[184],"FM-index-based":[185],"ReRAM":[186],"platform,":[187],"achieves":[189],"1.6\u00d7":[190],"higher":[191],"Watt.":[194]},"cited_by_api_url":"https://api.openalex.org/works?filter=cites:W2946017187","counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":4}],"updated_date":"2024-12-08T11:18:42.468929","created_date":"2019-05-29"}