{"id":"https://openalex.org/W2120588157","doi":"https://doi.org/10.1109/empdp.1998.647174","title":"Biological sequence analysis on distributed-shared memory multiprocessors","display_name":"Biological sequence analysis on distributed-shared memory multiprocessors","publication_year":2002,"publication_date":"2002-11-27","ids":{"openalex":"https://openalex.org/W2120588157","doi":"https://doi.org/10.1109/empdp.1998.647174","mag":"2120588157"},"language":"en","primary_location":{"is_oa":false,"landing_page_url":"https://doi.org/10.1109/empdp.1998.647174","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false},"type":"article","type_crossref":"proceedings-article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101861743","display_name":"Andr\u00e9s Rodr\u00edguez","orcid":"https://orcid.org/0000-0002-0431-2322"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"funder","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"A. Rodriguez","raw_affiliation_strings":["Computer Arquitecture Department, University of Malaga, Malaga, Spain"],"affiliations":[{"raw_affiliation_string":"Computer Arquitecture Department, University of Malaga, Malaga, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003302983","display_name":"Luis Gerardo de la Fraga","orcid":"https://orcid.org/0000-0002-9373-9837"},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"L.G. de la Fraga","raw_affiliation_strings":["BioComputint Unit, Centro Nacional de Biotecnolog\u00eda-CSIC, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"BioComputint Unit, Centro Nacional de Biotecnolog\u00eda-CSIC, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113573576","display_name":"Emilio L. Zapata","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"E.L. Zapata","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046960969","display_name":"J.M. Carazo","orcid":"https://orcid.org/0000-0003-0788-8447"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J.M. Carazo","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5082510742","display_name":"Oswaldo Trelles","orcid":"https://orcid.org/0000-0003-1554-8987"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"O. Trelles","raw_affiliation_strings":[],"affiliations":[]}],"institution_assertions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"fulltext_origin":"ngrams","cited_by_count":2,"citation_normalized_percentile":{"value":0.441584,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":64,"max":68},"biblio":{"volume":null,"issue":null,"first_page":"20","last_page":"26"},"is_retracted":false,"is_paratext":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9932,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9932,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9922,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9848,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/software-portability","display_name":"Software portability","score":0.89524734},{"id":"https://openalex.org/keywords/distributed-memory","display_name":"Distributed memory","score":0.5721537}],"concepts":[{"id":"https://openalex.org/C63000827","wikidata":"https://www.wikidata.org/wiki/Q3080428","display_name":"Software portability","level":2,"score":0.89524734},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.88722146},{"id":"https://openalex.org/C133875982","wikidata":"https://www.wikidata.org/wiki/Q764810","display_name":"Shared memory","level":2,"score":0.66546154},{"id":"https://openalex.org/C138101251","wikidata":"https://www.wikidata.org/wiki/Q213092","display_name":"Thread (computing)","level":2,"score":0.65345156},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.62369406},{"id":"https://openalex.org/C91481028","wikidata":"https://www.wikidata.org/wiki/Q1054686","display_name":"Distributed memory","level":3,"score":0.5721537},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.44595104},{"id":"https://openalex.org/C201410400","wikidata":"https://www.wikidata.org/wiki/Q1064412","display_name":"Multithreading","level":3,"score":0.4294107},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.42577592},{"id":"https://openalex.org/C854659","wikidata":"https://www.wikidata.org/wiki/Q1859284","display_name":"Message passing","level":2,"score":0.4141906},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.25988984},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"is_oa":false,"landing_page_url":"https://doi.org/10.1109/empdp.1998.647174","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false}],"best_oa_location":null,"sustainable_development_goals":[],"grants":[],"datasets":[],"versions":[],"referenced_works_count":7,"referenced_works":["https://openalex.org/W1507407061","https://openalex.org/W2054698853","https://openalex.org/W2074231493","https://openalex.org/W2108167744","https://openalex.org/W2143667865","https://openalex.org/W2166233246","https://openalex.org/W4239198058"],"related_works":["https://openalex.org/W98999783","https://openalex.org/W2498758832","https://openalex.org/W2314805133","https://openalex.org/W2154020360","https://openalex.org/W2133825528","https://openalex.org/W2133217435","https://openalex.org/W1998761481","https://openalex.org/W184749201","https://openalex.org/W1544002944","https://openalex.org/W1483073283"],"abstract_inverted_index":{"In":[0],"this":[1,46,68,110],"paper":[2],"we":[3],"present":[4],"a":[5,99],"task-level":[6],"implementation":[7],"of":[8,48,54],"several":[9],"biological":[10],"sequence":[11],"analysis":[12,86],"algorithms":[13,21,49,108],"on":[14,51,88,109],"distributed-shared":[15],"memory":[16],"multiprocessors.":[17],"All":[18],"the":[19,42,52,57,62],"studied":[20],"are":[22],"computationally":[23],"expensive":[24],"and":[25,61,80,90,105],"its":[26],"computational":[27],"patterns":[28],"ranges":[29],"from":[30],"regular":[31],"to":[32,40],"very":[33],"irregularly":[34],"structured":[35],"ones.":[36],"An":[37],"initial":[38],"approach":[39],"evaluate":[41],"regularity":[43],"level":[44],"for":[45,107],"kind":[47],"based":[50],"rate":[53],"free-dependent":[55],"tasks,":[56],"data":[58],"access":[59],"pattern":[60],"task":[63],"homogeneity,":[64],"is":[65,92],"presented":[66],"in":[67],"study.":[69],"Extensive":[70],"tests":[71],"have":[72],"been":[73],"performed":[74],"over":[75],"different":[76],"architectures":[77],"using":[78],"message-passing":[79],"thread-based":[81],"programming":[82],"models.":[83],"A":[84],"comparative":[85],"centered":[87],"performance":[89,106],"portability":[91,104],"also":[93],"presented.":[94],"The":[95],"results":[96],"give":[97],"us":[98],"general":[100],"knowledge":[101],"about":[102],"software":[103],"area.":[111]},"abstract_inverted_index_v3":null,"cited_by_api_url":"https://api.openalex.org/works?filter=cites:W2120588157","counts_by_year":[],"updated_date":"2025-02-18T00:17:29.582992","created_date":"2016-06-24"}