{"id":"https://openalex.org/W2984769480","doi":"https://doi.org/10.1093/nar/gkz933","title":"Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database","display_name":"Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database","publication_year":2019,"publication_date":"2019-11-12","ids":{"openalex":"https://openalex.org/W2984769480","doi":"https://doi.org/10.1093/nar/gkz933","mag":"2984769480","pmid":"https://pubmed.ncbi.nlm.nih.gov/31733057","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/7145613"},"language":"en","primary_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz933","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D776/31697291/gkz933.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true},"type":"article","type_crossref":"journal-article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/48/D1/D776/31697291/gkz933.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046773761","display_name":"Joshua D. Fortriede","orcid":"https://orcid.org/0000-0002-3293-5463"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua D Fortriede","raw_affiliation_strings":["Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA"],"affiliations":[{"raw_affiliation_string":"Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083931972","display_name":"Troy J. Pells","orcid":"https://orcid.org/0000-0002-2340-5356"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"funder","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Troy J Pells","raw_affiliation_strings":["Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada"],"affiliations":[{"raw_affiliation_string":"Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068464173","display_name":"Stanley Chu","orcid":null},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"funder","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Stanley Chu","raw_affiliation_strings":["Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada"],"affiliations":[{"raw_affiliation_string":"Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081764238","display_name":"Praneet Chaturvedi","orcid":"https://orcid.org/0000-0002-8713-6570"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Praneet Chaturvedi","raw_affiliation_strings":["Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA"],"affiliations":[{"raw_affiliation_string":"Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055710025","display_name":"DongZhuo Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"funder","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"DongZhuo Wang","raw_affiliation_strings":["Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada"],"affiliations":[{"raw_affiliation_string":"Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081245222","display_name":"Malcolm E Fisher","orcid":"https://orcid.org/0000-0003-1074-8103"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Malcom E Fisher","raw_affiliation_strings":["Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA"],"affiliations":[{"raw_affiliation_string":"Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046907178","display_name":"Christina James\u2010Zorn","orcid":"https://orcid.org/0000-0001-5495-4588"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"funder","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Christina James-Zorn","raw_affiliation_strings":["Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada"],"affiliations":[{"raw_affiliation_string":"Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100346996","display_name":"Ying Wang","orcid":"https://orcid.org/0000-0001-7719-9474"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ying Wang","raw_affiliation_strings":["Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA"],"affiliations":[{"raw_affiliation_string":"Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035506830","display_name":"Mardi J. Nenni","orcid":"https://orcid.org/0000-0002-6238-1932"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mardi J Nenni","raw_affiliation_strings":["Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA"],"affiliations":[{"raw_affiliation_string":"Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005917511","display_name":"Kevin A. Burns","orcid":"https://orcid.org/0009-0003-6587-4809"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin A Burns","raw_affiliation_strings":["Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA"],"affiliations":[{"raw_affiliation_string":"Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055199110","display_name":"Vaneet Lotay","orcid":null},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"funder","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Vaneet S Lotay","raw_affiliation_strings":["Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada"],"affiliations":[{"raw_affiliation_string":"Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046489815","display_name":"Virgilio G. Ponferrada","orcid":"https://orcid.org/0000-0002-8590-7183"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Virgilio G Ponferrada","raw_affiliation_strings":["Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA"],"affiliations":[{"raw_affiliation_string":"Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072513339","display_name":"Kamran Karimi","orcid":"https://orcid.org/0000-0001-5733-9409"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"funder","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Kamran Karimi","raw_affiliation_strings":["Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada"],"affiliations":[{"raw_affiliation_string":"Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003793915","display_name":"Aaron M. Zorn","orcid":"https://orcid.org/0000-0003-3217-3590"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aaron M Zorn","raw_affiliation_strings":["Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA"],"affiliations":[{"raw_affiliation_string":"Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064576180","display_name":"Peter D. Vize","orcid":"https://orcid.org/0000-0001-8026-0424"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"funder","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Peter D Vize","raw_affiliation_strings":["Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada"],"affiliations":[{"raw_affiliation_string":"Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada","institution_ids":["https://openalex.org/I168635309"]}]}],"institution_assertions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5072513339"],"corresponding_institution_ids":["https://openalex.org/I168635309"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.792,"has_fulltext":false,"cited_by_count":61,"citation_normalized_percentile":{"value":0.646243,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9972,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9811,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.7285564},{"id":"https://openalex.org/keywords/model-organism","display_name":"Model Organism","score":0.47117}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.89495564},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.7285564},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.67232305},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5777962},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5047852},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47438172},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.47117},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.35215655},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.32016897},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.20580202},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.2018936},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.10899225}],"mesh":[{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014981","descriptor_name":"Xenopus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014981","descriptor_name":"Xenopus","qualifier_ui":"","qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz933","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D776/31697291/gkz933.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"https://europepmc.org/articles/pmc7145613","pdf_url":"https://europepmc.org/articles/pmc7145613?pdf=render","source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":["European Bioinformatics Institute"],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7145613","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31733057","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false}],"best_oa_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz933","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D776/31697291/gkz933.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true},"sustainable_development_goals":[],"grants":[{"funder":"https://openalex.org/F4320307874","funder_display_name":"Wellcome","award_id":"RRID:SCR 007164"},{"funder":"https://openalex.org/F4320337611","funder_display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","award_id":"P41HD064556"}],"datasets":[],"versions":[],"referenced_works_count":15,"referenced_works":["https://openalex.org/W1999574084","https://openalex.org/W2039521726","https://openalex.org/W2105731904","https://openalex.org/W2108234281","https://openalex.org/W2118258530","https://openalex.org/W2158789637","https://openalex.org/W2170551349","https://openalex.org/W2171808845","https://openalex.org/W2336957559","https://openalex.org/W2534919910","https://openalex.org/W2765797013","https://openalex.org/W2767826728","https://openalex.org/W2804457431","https://openalex.org/W2916913049","https://openalex.org/W2936059989"],"related_works":["https://openalex.org/W4223896405","https://openalex.org/W3210243923","https://openalex.org/W3013644380","https://openalex.org/W2258998699","https://openalex.org/W2171737904","https://openalex.org/W2145833061","https://openalex.org/W2074740504","https://openalex.org/W2059629050","https://openalex.org/W1998405066","https://openalex.org/W1996935079"],"abstract_inverted_index":{"Xenbase":[0,43,89,91],"(www.xenbase.org)":[1],"is":[2],"a":[3,17,25,94,151],"knowledge":[4,50],"base":[5],"for":[6,145],"researchers":[7],"and":[8,30,36,54,84,99,117,135,140,153],"biomedical":[9,21],"scientists":[10],"that":[11,103],"employ":[12],"the":[13,47,58,75,125,143],"amphibian":[14],"Xenopus":[15,52],"as":[16,150],"model":[18],"organism":[19],"in":[20],"research":[22],"to":[23,45,82,124],"gain":[24],"deeper":[26],"understanding":[27],"of":[28,49,60,77,96],"developmental":[29],"disease":[31],"processes.":[32],"Through":[33],"expert":[34],"curation":[35],"automated":[37,147],"data":[38,100],"provisioning":[39],"from":[40],"various":[41],"sources":[42],"strives":[44],"integrate":[46],"body":[48],"on":[51],"genomics":[53],"biology":[55],"together":[56],"with":[57,87],"visualization":[59],"biologically":[61],"significant":[62],"interactions.":[63],"Most":[64],"current":[65],"studies":[66],"utilize":[67],"next":[68],"generation":[69],"sequencing":[70],"(NGS)":[71],"but":[72],"until":[73],"now":[74],"results":[76],"different":[78],"experiments":[79],"were":[80],"difficult":[81],"compare":[83],"not":[85],"integrated":[86,114],"other":[88],"content.":[90],"has":[92],"developed":[93],"suite":[95],"tools,":[97],"interfaces":[98],"processing":[101],"pipelines":[102],"transforms":[104],"NCBI":[105],"Gene":[106],"Expression":[107],"Omnibus":[108],"(GEO)":[109],"NGS":[110],"content":[111,131],"into":[112],"deeply":[113],"gene":[115,154],"expression":[116,149],"chromatin":[118],"data,":[119],"mapping":[120],"all":[121],"aligned":[122],"reads":[123],"most":[126],"recent":[127],"genome":[128],"builds.":[129],"This":[130],"can":[132],"be":[133],"queried":[134],"visualized":[136],"via":[137],"multiple":[138],"tools":[139],"also":[141],"provides":[142],"basis":[144],"future":[146],"'gene":[148],"phenotype'":[152],"regulatory":[155],"network":[156],"analyses.":[157]},"abstract_inverted_index_v3":null,"cited_by_api_url":"https://api.openalex.org/works?filter=cites:W2984769480","counts_by_year":[{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":20},{"year":2022,"cited_by_count":24},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":4}],"updated_date":"2025-03-16T06:08:50.293950","created_date":"2019-11-22"}