乐胖代购免代理版

{"id":"https://openalex.org/W2119636371","doi":"https://doi.org/10.1093/nar/gku404","title":"PEP-SiteFinder: a tool for the blind identification of peptide binding sites on protein surfaces","display_name":"PEP-SiteFinder: a tool for the blind identification of peptide binding sites on protein surfaces","publication_year":2014,"publication_date":"2014-05-06","ids":{"openalex":"https://openalex.org/W2119636371","doi":"https://doi.org/10.1093/nar/gku404","mag":"2119636371","pmid":"https://pubmed.ncbi.nlm.nih.gov/24803671","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/4086095"},"language":"en","primary_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku404","pdf_url":"https://academic.oup.com/nar/article-pdf/42/W1/W221/17423423/gku404.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},"type":"article","type_crossref":"journal-article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/42/W1/W221/17423423/gku404.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015050433","display_name":"Adrien Saladin","orcid":"https://orcid.org/0000-0002-0011-6578"},"institutions":[{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Adrien Saladin","raw_affiliation_strings":["INSERM U973, MTi, F-75205 Paris, France","Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, F-75205 Paris, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, F-75205 Paris, France","institution_ids":["https://openalex.org/I169173203","https://openalex.org/I4210091437","https://openalex.org/I204730241"]},{"raw_affiliation_string":"INSERM U973, MTi, F-75205 Paris, France","institution_ids":["https://openalex.org/I154526488"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074577875","display_name":"Julien Rey","orcid":"https://orcid.org/0000-0002-3050-511X"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210113863","display_name":"G\u00e9nomique Bioinformatique et Applications","ror":"https://ror.org/0264vhs54","country_code":"FR","type":"facility","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210113863","https://openalex.org/I4210134562"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Julien Rey","raw_affiliation_strings":["INSERM U973, MTi, F-75205 Paris, France","Ressource Parisienne en Bioinformatique Structurale, F-75205 Paris, France","Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, F-75205 Paris, France"],"affiliations":[{"raw_affiliation_string":"INSERM U973, MTi, F-75205 Paris, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, F-75205 Paris, France","institution_ids":["https://openalex.org/I169173203","https://openalex.org/I4210091437","https://openalex.org/I204730241"]},{"raw_affiliation_string":"Ressource Parisienne en Bioinformatique Structurale, F-75205 Paris, France","institution_ids":["https://openalex.org/I4210113863"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032768654","display_name":"P. Th\u00e9venet","orcid":"https://orcid.org/0000-0001-6626-7056"},"institutions":[{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pierre Th\u00e9venet","raw_affiliation_strings":["INSERM U973, MTi, F-75205 Paris, France","Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, F-75205 Paris, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, F-75205 Paris, France","institution_ids":["https://openalex.org/I169173203","https://openalex.org/I4210091437","https://openalex.org/I204730241"]},{"raw_affiliation_string":"INSERM U973, MTi, F-75205 Paris, France","institution_ids":["https://openalex.org/I154526488"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090330416","display_name":"Martin Zacharias","orcid":"https://orcid.org/0000-0001-5163-2663"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Zacharias","raw_affiliation_strings":["Technische Universit\u00e4t M\u00fcnchen 80333 M\u00fcnchen, Germany"],"affiliations":[{"raw_affiliation_string":"Technische Universit\u00e4t M\u00fcnchen 80333 M\u00fcnchen, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076907861","display_name":"Gautier Moroy","orcid":"https://orcid.org/0000-0002-8973-0477"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gautier Moroy","raw_affiliation_strings":["INSERM U973, MTi, F-75205 Paris, France","Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, F-75205 Paris, France"],"affiliations":[{"raw_affiliation_string":"INSERM U973, MTi, F-75205 Paris, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, F-75205 Paris, France","institution_ids":["https://openalex.org/I169173203","https://openalex.org/I4210091437","https://openalex.org/I204730241"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002795410","display_name":"Pierre Tuff\u00e9ry","orcid":"https://orcid.org/0000-0003-1033-9895"},"institutions":[{"id":"https://openalex.org/I4210113863","display_name":"G\u00e9nomique Bioinformatique et Applications","ror":"https://ror.org/0264vhs54","country_code":"FR","type":"facility","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210113863","https://openalex.org/I4210134562"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pierre Tuff\u00e9ry","raw_affiliation_strings":["INSERM U973, MTi, F-75205 Paris, France","Ressource Parisienne en Bioinformatique Structurale, F-75205 Paris, France","Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, F-75205 Paris, France"],"affiliations":[{"raw_affiliation_string":"Ressource Parisienne en Bioinformatique Structurale, F-75205 Paris, France","institution_ids":["https://openalex.org/I4210113863"]},{"raw_affiliation_string":"Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, F-75205 Paris, France","institution_ids":["https://openalex.org/I4210091437","https://openalex.org/I204730241","https://openalex.org/I169173203"]},{"raw_affiliation_string":"INSERM U973, MTi, F-75205 Paris, France","institution_ids":["https://openalex.org/I154526488"]}]}],"institution_assertions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630,"provenance":"doaj"},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630,"provenance":"doaj"},"fwci":4.437,"has_fulltext":true,"fulltext_origin":"pdf","cited_by_count":86,"citation_normalized_percentile":{"value":0.871928,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"42","issue":"W1","first_page":"W221","last_page":"W226"},"is_retracted":false,"is_paratext":false,"primary_topic":{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9994,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9994,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9993,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.55463064},{"id":"https://openalex.org/keywords/web-site","display_name":"Web site","score":0.4210859}],"concepts":[{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.7924809},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.77121663},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7630938},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5801079},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.57255447},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.55463064},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.46711028},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.42363617},{"id":"https://openalex.org/C2984519610","wikidata":"https://www.wikidata.org/wiki/Q35127","display_name":"Web site","level":3,"score":0.4210859},{"id":"https://openalex.org/C51639874","wikidata":"https://www.wikidata.org/wiki/Q167149","display_name":"Plasma protein binding","level":2,"score":0.41894624},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2622888},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.17013285},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004265","descriptor_name":"DNA Helicases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004265","descriptor_name":"DNA Helicases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004265","descriptor_name":"DNA Helicases","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"","qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku404","pdf_url":"https://academic.oup.com/nar/article-pdf/42/W1/W221/17423423/gku404.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"https://europepmc.org/articles/pmc4086095","pdf_url":"https://europepmc.org/articles/pmc4086095?pdf=render","source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":["European Bioinformatics Institute"],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4086095","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24803671","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false}],"best_oa_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku404","pdf_url":"https://academic.oup.com/nar/article-pdf/42/W1/W221/17423423/gku404.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},"sustainable_development_goals":[],"grants":[],"datasets":[],"versions":[],"referenced_works_count":34,"referenced_works":["https://openalex.org/W1969609139","https://openalex.org/W1970431511","https://openalex.org/W1972043325","https://openalex.org/W1975642089","https://openalex.org/W1979201508","https://openalex.org/W1983142511","https://openalex.org/W1986623293","https://openalex.org/W2016796493","https://openalex.org/W2017793317","https://openalex.org/W2023272942","https://openalex.org/W2049870911","https://openalex.org/W2050000500","https://openalex.org/W2051743378","https://openalex.org/W2054954101","https://openalex.org/W2061543974","https://openalex.org/W2073911195","https://openalex.org/W2082433496","https://openalex.org/W2096425628","https://openalex.org/W2107933517","https://openalex.org/W2108067237","https://openalex.org/W2109444605","https://openalex.org/W2111749857","https://openalex.org/W2115133023","https://openalex.org/W2116890528","https://openalex.org/W2131737890","https://openalex.org/W2136513242","https://openalex.org/W2143094533","https://openalex.org/W2147085530","https://openalex.org/W2152013549","https://openalex.org/W2153594105","https://openalex.org/W2156876686","https://openalex.org/W2164088236","https://openalex.org/W2165531467","https://openalex.org/W2265106521"],"related_works":["https://openalex.org/W969906062","https://openalex.org/W4309353019","https://openalex.org/W3187431608","https://openalex.org/W2914490533","https://openalex.org/W2072536165","https://openalex.org/W2021213676","https://openalex.org/W1974422922","https://openalex.org/W1970785155","https://openalex.org/W1832993298","https://openalex.org/W182682354"],"abstract_inverted_index":{"Peptide\u2013protein":[0],"interactions":[1],"are":[2],"important":[3],"to":[4,34,44,51,56,90,141,151],"many":[5],"processes":[6],"of":[7,32,38,48,77,83,103,130,147,169],"life,":[8],"particularly":[9],"for":[10,62,149],"signal":[11],"transmission":[12],"or":[13,55],"regulatory":[14],"mechanisms.":[15],"When":[16],"no":[17],"information":[18],"is":[19,31,69,176],"known":[20],"about":[21,166],"the":[22,41,46,53,75,81,98,119,128,137,144,167,170],"interaction":[23,39,148],"between":[24],"a":[25,28,59,70,78,84,113,131,159],"protein":[26,42,79,87,121],"and":[27,80,123],"peptide,":[29,85],"it":[30],"interest":[33],"propose":[35],"candidate":[36],"sites":[37],"at":[40,92,178],"surface,":[43,122],"assist":[45],"design":[47],"biological":[49],"experiments":[50],"probe":[52],"interaction,":[54],"serve":[57],"as":[58,127],"starting":[60],"point":[61],"more":[63],"focused":[64],"in":[65],"silico":[66],"approaches.":[67],"PEP-SiteFinder":[68,95,156,173],"tool":[71],"that":[72,136],"will,":[73],"given":[74,106],"structure":[76],"sequence":[82],"identify":[86],"residues":[88],"predicted":[89],"be":[91],"peptide\u2013protein":[93],"interface.":[94],"relies":[96],"on":[97,118],"3D":[99],"de":[100],"novo":[101],"generation":[102],"peptide":[104],"conformations":[105,110],"its":[107],"sequence.":[108],"These":[109],"then":[111],"undergo":[112],"fast":[114],"blind":[115],"rigid":[116],"docking":[117],"complete":[120],"we":[124,162],"have":[125,163],"found,":[126],"result":[129],"benchmark":[132],"over":[133],"41":[134],"complexes,":[135],"best":[138],"poses":[139],"overlap":[140],"some":[142],"extent":[143],"experimental":[145],"patch":[146],"close":[150],"90%":[152],"complexes.":[153],"In":[154],"addition,":[155],"also":[157],"returns":[158],"propensity":[160],"index":[161],"found":[164],"informative":[165],"confidence":[168],"prediction.":[171],"The":[172],"web":[174],"server":[175],"available":[177],"http://bioserv.rpbs.univ-paris-diderot.fr/PEP-SiteFinder.":[179]},"cited_by_api_url":"https://api.openalex.org/works?filter=cites:W2119636371","counts_by_year":[{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":14},{"year":2015,"cited_by_count":6}],"updated_date":"2024-12-14T08:15:40.592657","created_date":"2016-06-24"}