{"id":"https://openalex.org/W2139042094","doi":"https://doi.org/10.1093/nar/gkj069","title":"LOCATE: a mouse protein subcellular localization database","display_name":"LOCATE: a mouse protein subcellular localization database","publication_year":2005,"publication_date":"2005-12-28","ids":{"openalex":"https://openalex.org/W2139042094","doi":"https://doi.org/10.1093/nar/gkj069","mag":"2139042094","pmid":"https://pubmed.ncbi.nlm.nih.gov/16381849","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/1347432"},"language":"en","primary_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkj069","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D213/3924767/gkj069.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true},"type":"article","type_crossref":"journal-article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D213/3924767/gkj069.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074966371","display_name":"J. Lynn Fink","orcid":"https://orcid.org/0000-0003-2912-6048"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"funder","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"J. L. Fink","raw_affiliation_strings":["ARC Centre in Bioinformatics, University of Queensland, St Lucia, Queensland 4072, Australia."],"affiliations":[{"raw_affiliation_string":"ARC Centre in Bioinformatics, University of Queensland, St Lucia, Queensland 4072, Australia.","institution_ids":["https://openalex.org/I165143802"]}]}],"institution_assertions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5074966371"],"corresponding_institution_ids":["https://openalex.org/I165143802"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.705,"has_fulltext":true,"fulltext_origin":"pdf","cited_by_count":89,"citation_normalized_percentile":{"value":0.768232,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"34","issue":"90001","first_page":"D213","last_page":"D217"},"is_retracted":false,"is_paratext":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9992,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9971,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.6928466},{"id":"https://openalex.org/keywords/protein-sorting-signals","display_name":"Protein Sorting Signals","score":0.41897896}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.81567883},{"id":"https://openalex.org/C2776879804","wikidata":"https://www.wikidata.org/wiki/Q7630919","display_name":"Subcellular localization","level":3,"score":0.75890744},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.6928466},{"id":"https://openalex.org/C140051345","wikidata":"https://www.wikidata.org/wiki/Q7251501","display_name":"Protein subcellular localization prediction","level":3,"score":0.67501944},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.56227416},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5620054},{"id":"https://openalex.org/C144647389","wikidata":"https://www.wikidata.org/wiki/Q423042","display_name":"Membrane protein","level":3,"score":0.4873072},{"id":"https://openalex.org/C2908929163","wikidata":"https://www.wikidata.org/wiki/Q658882","display_name":"Protein Sorting Signals","level":5,"score":0.41897896},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3451029},{"id":"https://openalex.org/C41625074","wikidata":"https://www.wikidata.org/wiki/Q176088","display_name":"Membrane","level":2,"score":0.2812267},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.27186045},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.20569122},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19815597},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17460278},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.17324883},{"id":"https://openalex.org/C10858879","wikidata":"https://www.wikidata.org/wiki/Q899790","display_name":"Signal peptide","level":4,"score":0.12687945},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020033","descriptor_name":"Protein Isoforms","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":"","qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkj069","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D213/3924767/gkj069.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"https://europepmc.org/articles/pmc1347432","pdf_url":"https://europepmc.org/articles/pmc1347432?pdf=render","source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":["European Bioinformatics Institute"],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347432","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16381849","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false}],"best_oa_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkj069","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D213/3924767/gkj069.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true},"sustainable_development_goals":[],"grants":[],"datasets":[],"versions":[],"referenced_works_count":32,"referenced_works":["https://openalex.org/W1797365312","https://openalex.org/W2022756254","https://openalex.org/W2039128883","https://openalex.org/W2072471612","https://openalex.org/W2075495563","https://openalex.org/W2079664984","https://openalex.org/W2083756787","https://openalex.org/W2089606003","https://openalex.org/W2097870001","https://openalex.org/W2099468911","https://openalex.org/W2103017472","https://openalex.org/W2104878392","https://openalex.org/W2107580398","https://openalex.org/W2107903949","https://openalex.org/W2115840790","https://openalex.org/W2119412782","https://openalex.org/W2121780841","https://openalex.org/W2125725297","https://openalex.org/W2126544665","https://openalex.org/W2141885858","https://openalex.org/W2152653671","https://openalex.org/W2152770371","https://openalex.org/W2154755339","https://openalex.org/W2161062388","https://openalex.org/W2171709077","https://openalex.org/W3095583226","https://openalex.org/W4210400672","https://openalex.org/W4213060373","https://openalex.org/W4230221169","https://openalex.org/W4230932396","https://openalex.org/W4251079740","https://openalex.org/W4320800138"],"related_works":["https://openalex.org/W3170914833","https://openalex.org/W3001208427","https://openalex.org/W2906889822","https://openalex.org/W2801813992","https://openalex.org/W2391458050","https://openalex.org/W2160979370","https://openalex.org/W2149822709","https://openalex.org/W2124056645","https://openalex.org/W2073950431","https://openalex.org/W1851748528"],"abstract_inverted_index":{"We":[0],"present":[1],"here":[2],"LOCATE,":[3],"a":[4,49,79],"curated,":[5],"web-accessible":[6],"database":[7],"that":[8],"houses":[9],"data":[10,85],"describing":[11],"the":[12,21,32,62,67,90],"membrane":[13,73],"organization":[14,28,74],"and":[15,53,72,82],"subcellular":[16,38,70],"localization":[17,84],"of":[18,40,75,89],"proteins":[19,42,77],"from":[20,43],"FANTOM3":[22],"Isoform":[23],"Protein":[24],"Sequence":[25],"set.":[26],"Membrane":[27],"is":[29,94],"predicted":[30],"by":[31,48,54],"high-throughput,":[33,50],"computational":[34],"pipeline":[35],"MemO.":[36],"The":[37],"locations":[39],"selected":[41],"this":[44],"set":[45],"were":[46],"determined":[47],"immunofluorescence-based":[51],"assay":[52],"manually":[55],"reviewing":[56],">1700":[57],"peer-reviewed":[58],"publications.":[59],"LOCATE":[60],"represents":[61],"first":[63],"effort":[64],"to":[65],"catalogue":[66],"experimentally":[68],"verified":[69],"location":[71],"mammalian":[76],"using":[78],"high-throughput":[80],"approach":[81],"provides":[83],"for":[86],"approximately":[87],"40%":[88],"mouse":[91],"proteome.":[92],"It":[93],"available":[95],"at":[96],"http://locate.imb.uq.edu.au.":[97]},"abstract_inverted_index_v3":null,"cited_by_api_url":"https://api.openalex.org/works?filter=cites:W2139042094","counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":5}],"updated_date":"2025-02-25T04:12:59.553667","created_date":"2016-06-24"}