{"id":"https://openalex.org/W2126754352","doi":"https://doi.org/10.1093/bioinformatics/btu784","title":"LigDig: a web server for querying ligand\u2013protein interactions","display_name":"LigDig: a web server for querying ligand\u2013protein interactions","publication_year":2014,"publication_date":"2014-11-29","ids":{"openalex":"https://openalex.org/W2126754352","doi":"https://doi.org/10.1093/bioinformatics/btu784","mag":"2126754352","pmid":"https://pubmed.ncbi.nlm.nih.gov/25433696","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/4382906"},"language":"en","primary_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu784","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/7/1147/50306264/bioinformatics_31_7_1147.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},"type":"article","type_crossref":"journal-article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/7/1147/50306264/bioinformatics_31_7_1147.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013288837","display_name":"Jonathan C. Fuller","orcid":"https://orcid.org/0000-0001-8801-149X"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"funder","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]},{"id":"https://openalex.org/I4210151100","display_name":"DKFZ-ZMBH Alliance","ror":"https://ror.org/05x8b4491","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4210151100"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jonathan C. Fuller","raw_affiliation_strings":["1 Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies (HITS), 69118 Heidelberg, 2Center for Molecular Biology Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany and 3Interdisciplinary Center for Scientific Computing (IWR), 69120 Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"1 Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies (HITS), 69118 Heidelberg, 2Center for Molecular Biology Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany and 3Interdisciplinary Center for Scientific Computing (IWR), 69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909","https://openalex.org/I71030271","https://openalex.org/I4210151100","https://openalex.org/I223822909","https://openalex.org/I71030271","https://openalex.org/I4210151100"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050558310","display_name":"Michael D. Martinez","orcid":"https://orcid.org/0000-0001-5672-5375"},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]},{"id":"https://openalex.org/I4210151100","display_name":"DKFZ-ZMBH Alliance","ror":"https://ror.org/05x8b4491","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4210151100"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"funder","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Martinez","raw_affiliation_strings":["1 Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies (HITS), 69118 Heidelberg, 2Center for Molecular Biology Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany and 3Interdisciplinary Center for Scientific Computing (IWR), 69120 Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"1 Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies (HITS), 69118 Heidelberg, 2Center for Molecular Biology Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany and 3Interdisciplinary Center for Scientific Computing (IWR), 69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I71030271","https://openalex.org/I4210151100","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028202618","display_name":"Stefan Henrich","orcid":null},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]},{"id":"https://openalex.org/I4210151100","display_name":"DKFZ-ZMBH Alliance","ror":"https://ror.org/05x8b4491","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4210151100"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"funder","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Henrich","raw_affiliation_strings":["1 Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies (HITS), 69118 Heidelberg, 2Center for Molecular Biology Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany and 3Interdisciplinary Center for Scientific Computing (IWR), 69120 Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"1 Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies (HITS), 69118 Heidelberg, 2Center for Molecular Biology Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany and 3Interdisciplinary Center for Scientific Computing (IWR), 69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I71030271","https://openalex.org/I4210151100","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014366804","display_name":"Antonia Stank","orcid":"https://orcid.org/0000-0002-3424-4500"},"institutions":[{"id":"https://openalex.org/I4210151100","display_name":"DKFZ-ZMBH Alliance","ror":"https://ror.org/05x8b4491","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4210151100"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"funder","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Antonia Stank","raw_affiliation_strings":["1 Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies (HITS), 69118 Heidelberg, 2Center for Molecular Biology Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany and 3Interdisciplinary Center for Scientific Computing (IWR), 69120 Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"1 Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies (HITS), 69118 Heidelberg, 2Center for Molecular Biology Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany and 3Interdisciplinary Center for Scientific Computing (IWR), 69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I4210151100","https://openalex.org/I223822909","https://openalex.org/I71030271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055274857","display_name":"Stefan Richter","orcid":"https://orcid.org/0000-0001-5373-8381"},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]},{"id":"https://openalex.org/I4210151100","display_name":"DKFZ-ZMBH Alliance","ror":"https://ror.org/05x8b4491","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4210151100"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"funder","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Richter","raw_affiliation_strings":["1 Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies (HITS), 69118 Heidelberg, 2Center for Molecular Biology Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany and 3Interdisciplinary Center for Scientific Computing (IWR), 69120 Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"1 Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies (HITS), 69118 Heidelberg, 2Center for Molecular Biology Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany and 3Interdisciplinary Center for Scientific Computing (IWR), 69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I71030271","https://openalex.org/I4210151100","https://openalex.org/I223822909"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005498993","display_name":"Rebecca C. Wade","orcid":"https://orcid.org/0000-0001-5951-8670"},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]},{"id":"https://openalex.org/I4210151100","display_name":"DKFZ-ZMBH Alliance","ror":"https://ror.org/05x8b4491","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4210151100"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"funder","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rebecca C. Wade","raw_affiliation_strings":["1 Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies (HITS), 69118 Heidelberg, 2Center for Molecular Biology Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany and 3Interdisciplinary Center for Scientific Computing (IWR), 69120 Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"1 Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies (HITS), 69118 Heidelberg, 2Center for Molecular Biology Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany and 3Interdisciplinary Center for Scientific Computing (IWR), 69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I71030271","https://openalex.org/I4210151100","https://openalex.org/I223822909","https://openalex.org/I71030271","https://openalex.org/I4210151100","https://openalex.org/I223822909","https://openalex.org/I71030271","https://openalex.org/I4210151100","https://openalex.org/I223822909","https://openalex.org/I71030271","https://openalex.org/I4210151100","https://openalex.org/I223822909"]}]}],"institution_assertions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.422,"has_fulltext":true,"fulltext_origin":"pdf","cited_by_count":13,"citation_normalized_percentile":{"value":0.801992,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":88},"biblio":{"volume":"31","issue":"7","first_page":"1147","last_page":"1149"},"is_retracted":false,"is_paratext":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9988,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9947,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chembl","display_name":"chEMBL","score":0.829538},{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.76392865},{"id":"https://openalex.org/keywords/pubchem","display_name":"PubChem","score":0.73184705},{"id":"https://openalex.org/keywords/ligand-efficiency","display_name":"Ligand efficiency","score":0.57618105},{"id":"https://openalex.org/keywords/protein-ligand","display_name":"Protein ligand","score":0.47602445}],"concepts":[{"id":"https://openalex.org/C63222358","wikidata":"https://www.wikidata.org/wiki/Q6120337","display_name":"chEMBL","level":3,"score":0.829538},{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.76392865},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7553319},{"id":"https://openalex.org/C158180186","wikidata":"https://www.wikidata.org/wiki/Q278487","display_name":"PubChem","level":2,"score":0.73184705},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.589411},{"id":"https://openalex.org/C204171352","wikidata":"https://www.wikidata.org/wiki/Q6545861","display_name":"Ligand efficiency","level":4,"score":0.57618105},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5165566},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.50324863},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4940417},{"id":"https://openalex.org/C109095088","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Protein ligand","level":2,"score":0.47602445},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.45579657},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.4432443},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.42148995},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.37990847},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34864062},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33940414},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.28637502},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.26071578},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.24678072},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.24307102},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.17829448},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16156426},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005635","descriptor_name":"Fructosediphosphates","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005635","descriptor_name":"Fructosediphosphates","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"","qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu784","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/7/1147/50306264/bioinformatics_31_7_1147.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"https://europepmc.org/articles/pmc4382906","pdf_url":"https://europepmc.org/articles/pmc4382906?pdf=render","source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":["European Bioinformatics Institute"],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4382906","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25433696","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false}],"best_oa_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu784","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/7/1147/50306264/bioinformatics_31_7_1147.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},"sustainable_development_goals":[],"grants":[],"datasets":[],"versions":[],"referenced_works_count":27,"referenced_works":["https://openalex.org/W1989157022","https://openalex.org/W1989263028","https://openalex.org/W2011703027","https://openalex.org/W2027482274","https://openalex.org/W2033377040","https://openalex.org/W2047399603","https://openalex.org/W2047544230","https://openalex.org/W2085277871","https://openalex.org/W2087563523","https://openalex.org/W2096360825","https://openalex.org/W2096541451","https://openalex.org/W2096863497","https://openalex.org/W2107573230","https://openalex.org/W2114850508","https://openalex.org/W2129370330","https://openalex.org/W2134221731","https://openalex.org/W2138770756","https://openalex.org/W2152997175","https://openalex.org/W2159482845","https://openalex.org/W2161880345","https://openalex.org/W2162144833","https://openalex.org/W2165565773","https://openalex.org/W2169678694","https://openalex.org/W2170146596","https://openalex.org/W2172162746","https://openalex.org/W2605068739","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W3019245100","https://openalex.org/W3018299999","https://openalex.org/W3004945569","https://openalex.org/W3004216055","https://openalex.org/W3004024388","https://openalex.org/W3003313828","https://openalex.org/W2920928233","https://openalex.org/W2800324616","https://openalex.org/W2145688516","https://openalex.org/W2126754352"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"LigDig":[2,35,142,163,173],"is":[3,37,174],"a":[4,73,78,90,104,108],"web":[5],"server":[6],"designed":[7],"to":[8,17,59,64],"answer":[9,65],"questions":[10],"that":[11],"previously":[12],"required":[13],"several":[14],"independent":[15],"queries":[16],"diverse":[18],"data":[19,184],"sources.":[20],"It":[21],"also":[22],"performs":[23],"basic":[24],"manipulations":[25],"and":[26,41,92,128,140,152,154,161,171],"analyses":[27],"of":[28,31,43,89,103,117,124,133,145],"the":[29,54,60,70,100],"structures":[30,116,123],"protein\u2013ligand":[32,118,134],"complexes.":[33],"The":[34],"webserver":[36],"modular":[38],"in":[39,62,169],"design":[40],"consists":[42],"seven":[44],"tools,":[45],"which":[46],"can":[47,164],"be":[48,165],"used":[49,166],"separately,":[50],"or":[51],"via":[52],"linking":[53],"output":[55],"from":[56],"one":[57],"tool":[58],"next,":[61],"order":[63],"more":[66],"complex":[67],"questions.":[68],"Currently,":[69],"tools":[71],"allow":[72],"user":[74],"to:":[75],"(i)":[76],"perform":[77,107],"free-text":[79],"compound":[80,112],"search,":[81],"(ii)":[82],"search":[83,98,110],"for":[84,99,111,136],"suitable":[85],"ligands,":[86],"particularly":[87],"inhibitors,":[88],"protein":[91],"query":[93],"their":[94],"interaction":[95],"network,":[96],"(iii)":[97],"likely":[101],"function":[102],"ligand,":[105],"(iv)":[106],"batch":[109],"identifiers,":[113],"(v)":[114],"find":[115],"complexes,":[119],"(vi)":[120],"compare":[121],"three-dimensional":[122],"ligand":[125],"binding":[126],"sites":[127],"(vii)":[129],"prepare":[130],"coordinate":[131],"files":[132],"complexes":[135],"further":[137],"calculations.":[138],"Availability":[139],"implementation:":[141],"makes":[143],"use":[144],"freely":[146],"available":[147,175,186],"databases,":[148],"including":[149,157],"ChEMBL,":[150],"PubChem":[151],"SABIO-RK,":[153],"software":[155],"programs,":[156],"cytoscape.js,":[158],"PDB2PQR,":[159],"ProBiS":[160],"Fconv.":[162],"by":[167],"non-experts":[168],"bio-":[170],"chemoinformatics.":[172],"at:":[176],"http://mcm.h-its.org/ligdig.":[177],"Contact:":[178],"jonathan.fuller@h-its.org,":[179],"rebecca.wade@h-its.org":[180],"Supplementary":[181,183],"information:":[182],"are":[185],"at":[187],"Bioinformatics":[188],"online.":[189]},"abstract_inverted_index_v3":null,"cited_by_api_url":"https://api.openalex.org/works?filter=cites:W2126754352","counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2025-04-16T19:51:36.641488","created_date":"2016-06-24"}