{"id":"https://openalex.org/W2135233310","doi":"https://doi.org/10.1093/bioinformatics/btu200","title":"aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data","display_name":"aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data","publication_year":2014,"publication_date":"2014-04-20","ids":{"openalex":"https://openalex.org/W2135233310","doi":"https://doi.org/10.1093/bioinformatics/btu200","mag":"2135233310","pmid":"https://pubmed.ncbi.nlm.nih.gov/24753486","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/4147881"},"language":"en","primary_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu200","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2511/48927082/bioinformatics_30_17_2511.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},"type":"article","type_crossref":"journal-article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2511/48927082/bioinformatics_30_17_2511.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021900740","display_name":"George Rosenberger","orcid":"https://orcid.org/0000-0002-1655-6789"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"funder","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"funder","lineage":["https://openalex.org/I202697423"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"George Rosenberger","raw_affiliation_strings":["1 \u00a01Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland, 2PhD Program in Systems Biology, University of Zurich and ETH Zurich, Zurich, Switzerland and 3Faculty of Science, University of Zurich, Zurich, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland, 2PhD Program in Systems Biology, University of Zurich and ETH Zurich, Zurich, Switzerland and 3Faculty of Science, University of Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088","https://openalex.org/I202697423"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090320822","display_name":"Christina Ludwig","orcid":"https://orcid.org/0000-0002-6131-7322"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"funder","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"funder","lineage":["https://openalex.org/I202697423"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Christina Ludwig","raw_affiliation_strings":["1 \u00a01Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland, 2PhD Program in Systems Biology, University of Zurich and ETH Zurich, Zurich, Switzerland and 3Faculty of Science, University of Zurich, Zurich, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland, 2PhD Program in Systems Biology, University of Zurich and ETH Zurich, Zurich, Switzerland and 3Faculty of Science, University of Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088","https://openalex.org/I202697423"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058994478","display_name":"Hannes R\u00f6st","orcid":"https://orcid.org/0000-0003-0990-7488"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"funder","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"funder","lineage":["https://openalex.org/I202697423"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Hannes L. R\u00f6st","raw_affiliation_strings":["1 \u00a01Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland, 2PhD Program in Systems Biology, University of Zurich and ETH Zurich, Zurich, Switzerland and 3Faculty of Science, University of Zurich, Zurich, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland, 2PhD Program in Systems Biology, University of Zurich and ETH Zurich, Zurich, Switzerland and 3Faculty of Science, University of Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088","https://openalex.org/I202697423"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053361384","display_name":"Ruedi Aebersold","orcid":"https://orcid.org/0000-0002-9576-3267"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"funder","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"funder","lineage":["https://openalex.org/I202697423"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Ruedi Aebersold","raw_affiliation_strings":["1 \u00a01Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland, 2PhD Program in Systems Biology, University of Zurich and ETH Zurich, Zurich, Switzerland and 3Faculty of Science, University of Zurich, Zurich, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland, 2PhD Program in Systems Biology, University of Zurich and ETH Zurich, Zurich, Switzerland and 3Faculty of Science, University of Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088","https://openalex.org/I202697423"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089221737","display_name":"Lars Malmstr\u00f6m","orcid":"https://orcid.org/0000-0001-9885-9312"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"funder","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"funder","lineage":["https://openalex.org/I202697423"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Lars Malmstr\u00f6m","raw_affiliation_strings":["1 \u00a01Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland, 2PhD Program in Systems Biology, University of Zurich and ETH Zurich, Zurich, Switzerland and 3Faculty of Science, University of Zurich, Zurich, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland, 2PhD Program in Systems Biology, University of Zurich and ETH Zurich, Zurich, Switzerland and 3Faculty of Science, University of Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088","https://openalex.org/I202697423"]}]}],"institution_assertions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.29,"has_fulltext":true,"fulltext_origin":"pdf","cited_by_count":66,"citation_normalized_percentile":{"value":0.838692,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":"30","issue":"17","first_page":"2511","last_page":"2513"},"is_retracted":false,"is_paratext":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9999,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9999,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9998,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9997,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization","score":0.7264381},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5849791}],"concepts":[{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.7264381},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.63251674},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.6155133},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6104147},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5849791},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.55111325},{"id":"https://openalex.org/C80311884","wikidata":"https://www.wikidata.org/wiki/Q7268939","display_name":"Quantitative proteomics","level":4,"score":0.47628823},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4024435},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2252715},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.19206846},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"","qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu200","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2511/48927082/bioinformatics_30_17_2511.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"https://europepmc.org/articles/pmc4147881","pdf_url":"https://europepmc.org/articles/pmc4147881?pdf=render","source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":["European Bioinformatics Institute"],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/89391","pdf_url":"https://www.research-collection.ethz.ch/bitstream/20.500.11850/89391/2/btu200.pdf","source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":["ETH Zurich"],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"https://www.zora.uzh.ch/id/eprint/154407/1/ZORA_NL_154407.pdf","pdf_url":"https://www.zora.uzh.ch/id/eprint/154407/1/ZORA_NL_154407.pdf","source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":["University of Zurich"],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"http://doc.rero.ch/record/294483/files/btu200.pdf","pdf_url":"http://doc.rero.ch/record/294483/files/btu200.pdf","source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":["European Organization for Nuclear Research"],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4147881","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24753486","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false}],"best_oa_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu200","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/17/2511/48927082/bioinformatics_30_17_2511.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.45}],"grants":[],"datasets":[],"versions":[],"referenced_works_count":9,"referenced_works":["https://openalex.org/W1986887325","https://openalex.org/W2001472155","https://openalex.org/W2008214517","https://openalex.org/W2041852635","https://openalex.org/W2053894359","https://openalex.org/W2128551987","https://openalex.org/W2141323537","https://openalex.org/W2148342439","https://openalex.org/W2165925503"],"related_works":["https://openalex.org/W656697834","https://openalex.org/W3089696757","https://openalex.org/W3081950544","https://openalex.org/W3005464483","https://openalex.org/W2374027747","https://openalex.org/W2160416873","https://openalex.org/W2097713953","https://openalex.org/W2000259163","https://openalex.org/W1990519872","https://openalex.org/W1574322319"],"abstract_inverted_index":{"Motivation:":[0],"The":[1,145],"determination":[2],"of":[3,6,16,48],"absolute":[4,32,61,73,92],"quantities":[5,34],"proteins":[7],"in":[8,26,125,142],"biological":[9],"samples":[10],"is":[11,123],"necessary":[12],"for":[13,104],"multiple":[14],"types":[15,47],"scientific":[17],"inquiry.":[18],"While":[19],"relative":[20],"quantification":[21,75],"has":[22,76],"been":[23,36,43,77],"commonly":[24,90],"used":[25,91],"proteomics,":[27],"few":[28],"proteomic":[29],"datasets":[30],"measuring":[31],"protein":[33,74,94],"have":[35,42],"reported":[37],"to":[38],"date.":[39],"Various":[40],"technologies":[41],"applied":[44],"using":[45],"different":[46,60],"input":[49],"data,":[50,107],"e.g.":[51],"ion":[52],"intensities":[53],"or":[54],"spectral":[55],"counts,":[56],"as":[57,59],"well":[58],"normalization":[62],"strategies.":[63],"To":[64],"date,":[65],"a":[66,82],"user-friendly":[67],"and":[68,102,116,120,127,137],"transparent":[69],"software":[70],"supporting":[71],"large-scale":[72],"lacking.":[78],"Results:":[79],"We":[80],"present":[81],"bioinformatics":[83],"tool,":[84],"termed":[85],"aLFQ,":[86],"which":[87],"supports":[88],"the":[89,131,143,152],"label-free":[93],"abundance":[95],"estimation":[96],"methods":[97],"(TopN,":[98],"iBAQ,":[99],"APEX,":[100],"NSAF":[101],"SCAMPI)":[103],"LC-MS/MS":[105],"proteomics":[106],"together":[108],"with":[109],"validation":[110],"algorithms":[111],"enabling":[112],"automated":[113],"data":[114,139,147,155],"analysis":[115],"error":[117],"estimation.":[118],"Availability":[119],"implementation:":[121],"aLFQ":[122],"written":[124],"R":[126],"freely":[128],"available":[129,165],"under":[130],"GPLv3":[132],"from":[133,151],"CRAN":[134],"(http://www.cran.r-project.org).":[135],"Instructions":[136],"example":[138],"are":[140,164],"provided":[141],"R-package.":[144],"raw":[146,154],"can":[148],"be":[149],"obtained":[150],"PeptideAtlas":[153],"repository":[156],"(PASS00321).":[157],"Contact:":[158],"lars.malmstroem@imsb.biol.ethz.ch":[159],"Supplementary":[160,162],"information:":[161],"Data":[163],"at":[166],"Bioinformatics":[167],"online.":[168]},"abstract_inverted_index_v3":null,"cited_by_api_url":"https://api.openalex.org/works?filter=cites:W2135233310","counts_by_year":[{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2025-04-28T16:21:36.331728","created_date":"2016-06-24"}