{"id":"https://openalex.org/W2126874393","doi":"https://doi.org/10.1093/bioinformatics/btn054","title":"Statistical search on the Semantic Web","display_name":"Statistical search on the Semantic Web","publication_year":2008,"publication_date":"2008-02-08","ids":{"openalex":"https://openalex.org/W2126874393","doi":"https://doi.org/10.1093/bioinformatics/btn054","mag":"2126874393","pmid":"https://pubmed.ncbi.nlm.nih.gov/18263641"},"language":"en","primary_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn054","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/7/1002/49049392/bioinformatics_24_7_1002.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true},"type":"article","type_crossref":"journal-article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/7/1002/49049392/bioinformatics_24_7_1002.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056616525","display_name":"Norio Kobayashi","orcid":"https://orcid.org/0009-0007-8718-6010"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Norio Kobayashi","raw_affiliation_strings":["Integrative Omics Research Team, Computational and Experimental Systems Biology Group, Genomic Sciences Center, RIKEN, 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045, Japan"],"affiliations":[{"raw_affiliation_string":"Integrative Omics Research Team, Computational and Experimental Systems Biology Group, Genomic Sciences Center, RIKEN, 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071431815","display_name":"Tetsuro Toyoda","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tetsuro Toyoda","raw_affiliation_strings":["Integrative Omics Research Team, Computational and Experimental Systems Biology Group, Genomic Sciences Center, RIKEN, 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045, Japan"],"affiliations":[{"raw_affiliation_string":"Integrative Omics Research Team, Computational and Experimental Systems Biology Group, Genomic Sciences Center, RIKEN, 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210150921"]}]}],"institution_assertions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618,"provenance":"doaj"},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618,"provenance":"doaj"},"fwci":1.97,"has_fulltext":true,"fulltext_origin":"pdf","cited_by_count":26,"citation_normalized_percentile":{"value":0.66386,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":91},"biblio":{"volume":"24","issue":"7","first_page":"1002","last_page":"1010"},"is_retracted":false,"is_paratext":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9961,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9946,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/semantic-search","display_name":"Semantic Search","score":0.49650174},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance","score":0.4338756}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8530315},{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.6645745},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6577744},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.65316164},{"id":"https://openalex.org/C166423231","wikidata":"https://www.wikidata.org/wiki/Q1891170","display_name":"Semantic search","level":3,"score":0.49650174},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.46213216},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.45975873},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.4338756},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.35819477},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":"","qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn054","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/7/1002/49049392/bioinformatics_24_7_1002.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18263641","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false}],"best_oa_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn054","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/7/1002/49049392/bioinformatics_24_7_1002.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true},"sustainable_development_goals":[],"grants":[],"datasets":[],"versions":[],"referenced_works_count":24,"referenced_works":["https://openalex.org/W1504439773","https://openalex.org/W1854214752","https://openalex.org/W2006166559","https://openalex.org/W2024243714","https://openalex.org/W2052522161","https://openalex.org/W2054955422","https://openalex.org/W2063166169","https://openalex.org/W2094591616","https://openalex.org/W2103017472","https://openalex.org/W2106774530","https://openalex.org/W2115007282","https://openalex.org/W2118002992","https://openalex.org/W2128438887","https://openalex.org/W2132218857","https://openalex.org/W2141664150","https://openalex.org/W2152881983","https://openalex.org/W2157890829","https://openalex.org/W2159203162","https://openalex.org/W2242459625","https://openalex.org/W2274895364","https://openalex.org/W4231824804","https://openalex.org/W4239696231","https://openalex.org/W4240689716","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W4241483715","https://openalex.org/W4206665951","https://openalex.org/W3139465322","https://openalex.org/W2904139343","https://openalex.org/W2768092701","https://openalex.org/W2615202182","https://openalex.org/W2604011835","https://openalex.org/W2529794967","https://openalex.org/W2528203718","https://openalex.org/W2484233589"],"abstract_inverted_index":{"Abstract":[0],"Motivation:":[1],"Statistical":[2],"analysis":[3],"of":[4,53,89,98,123,131,166,176,179,184,212],"links":[5],"on":[6,25,215],"the":[7,38,95,129,210,216,230,234],"Semantic":[8,39,217],"Web":[9,40,218],"is":[10,42,227],"important":[11],"for":[12,37,104,116,219,233],"various":[13],"evaluation":[14,52,88,175],"purposes":[15],"such":[16],"as":[17,32,229],"quantifying":[18],"an":[19],"individual's":[20],"scientific":[21],"research":[22],"output":[23],"based":[24],"citation":[26],"links.":[27,55],"SPARQL":[28,60],"has":[29],"been":[30],"proposed":[31],"a":[33,62,120,140,144,150,163,171],"standardized":[34],"query":[35,68],"language":[36,69],"and":[41,72,86,115,155,173,189,195,239],"intuitively":[43],"understandable;":[44],"however,":[45],"it":[46],"does":[47],"not":[48],"adequately":[49],"support":[50],"statistical":[51,87,177],"semantic":[54,83],"Results:":[56],"We":[57,92,146],"have":[58,93,147],"extended":[59],"to":[61,79,187],"novel":[63],"Resource":[64],"Description":[65],"Framework":[66],"(RDF)":[67],"termed":[70,153],"General":[71,154],"Rapid":[73,156],"Association":[74,157],"Study":[75,158],"Query":[76],"Language":[77],"(GRASQL)":[78],"generate":[80],"inferences":[81],"connecting":[82],"Boolean-based":[84],"deduction":[85],"RDF":[90],"resources.":[91],"verified":[94],"descriptive":[96],"capability":[97],"GRASQL":[99,102,167],"by":[100,125,143,169],"writing":[101],"queries":[103,168],"practical":[105,200],"biomedical":[106,220],"search":[107,151,231],"patterns":[108],"including":[109],"in":[110,119,139,201],"silico":[111,202],"positional":[112,203],"cloning":[113,204],"studies":[114],"ranking":[117],"researchers":[118],"specific":[121,134],"domain":[122],"expertise":[124],"introducing":[126],"k":[127],"index,":[128],"number":[130],"papers":[132],"containing":[133],"keywords":[135,194],"that":[136],"are":[137,251],"published":[138],"fixed":[141],"period":[142],"researcher.":[145],"also":[148],"developed":[149],"engine":[152,232],"Engine":[159],"(GRASE),":[160],"which":[161],"executes":[162],"restricted":[164],"variety":[165],"requesting":[170],"dynamic":[172],"comprehensive":[174],"significance":[178],"intersections":[180],"between":[181],"each":[182],"group":[183],"documents":[185,191],"assigned":[186],"URIs":[188],"those":[190],"matching":[192],"user-specified":[193],"omics":[196],"conditions.":[197],"By":[198],"performing":[199],"searches":[205],"with":[206],"GRASE,":[207],"we":[208],"show":[209],"relevance":[211],"our":[213],"approach":[214],"knowledge":[221],"discovery":[222],"problem":[223],"solving.":[224],"Availability:":[225],"GRASE":[226],"used":[228],"Positional":[235],"Medline":[236],"(PosMed)":[237],"service":[238,242],"Researcher":[240],"Finder":[241],"at":[243,253],"http://omicspace.riken.jp/":[244],"Contact:":[245],"toyop@gsc.riken.jp":[246],"Supplementary":[247,249],"information:":[248],"data":[250],"available":[252],"Bioinformatics":[254],"online.":[255]},"cited_by_api_url":"https://api.openalex.org/works?filter=cites:W2126874393","counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2024-12-11T19:29:26.026363","created_date":"2016-06-24"}