{"id":"https://openalex.org/W4224247224","doi":"https://doi.org/10.1093/bioinformatics/btac270","title":"Steer\u2019n\u2019Detect: fast 2D template detection with accurate orientation estimation","display_name":"Steer\u2019n\u2019Detect: fast 2D template detection with accurate orientation estimation","publication_year":2022,"publication_date":"2022-04-14","ids":{"openalex":"https://openalex.org/W4224247224","doi":"https://doi.org/10.1093/bioinformatics/btac270","pmid":"https://pubmed.ncbi.nlm.nih.gov/35435214"},"language":"en","primary_location":{"is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac270","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false},"type":"article","type_crossref":"journal-article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://infoscience.epfl.ch/record/294172/files/uhlmann2202.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034638851","display_name":"Virginie Uhlmann","orcid":"https://orcid.org/0000-0002-2859-9241"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"funder","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Virginie Uhlmann","raw_affiliation_strings":["European Bioinformatics Institute, European Molecular Biology Laboratory (EMBL) , Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute, European Molecular Biology Laboratory (EMBL) , Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043999950","display_name":"Zsuzsanna P\u00fcsp\u00f6ki","orcid":"https://orcid.org/0000-0002-1807-9525"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"funder","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Zsuzsanna P\u00fcsp\u00f6ki","raw_affiliation_strings":["School of Engineering, Biomedical Imaging Group, Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL) , Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"School of Engineering, Biomedical Imaging Group, Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL) , Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043355848","display_name":"Adrien Depeursinge","orcid":"https://orcid.org/0000-0002-2362-0304"},"institutions":[{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Adrien Depeursinge","raw_affiliation_strings":["Institute of Information Systems, University of Applied Sciences Western Switzerland (HES-SO) , Sierre, Switzerland"],"affiliations":[{"raw_affiliation_string":"Institute of Information Systems, University of Applied Sciences Western Switzerland (HES-SO) , Sierre, Switzerland","institution_ids":["https://openalex.org/I173439891"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027830035","display_name":"Micha\u00ebl Unser","orcid":"https://orcid.org/0000-0003-1248-2513"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"funder","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Michael Unser","raw_affiliation_strings":["School of Engineering, Biomedical Imaging Group, Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL) , Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"School of Engineering, Biomedical Imaging Group, Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL) , Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019987836","display_name":"Daniel Sage","orcid":"https://orcid.org/0000-0002-1150-1623"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"funder","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Daniel Sage","raw_affiliation_strings":["School of Engineering, Biomedical Imaging Group, Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL) , Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"School of Engineering, Biomedical Imaging Group, Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL) , Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015119381","display_name":"Julien Fageot","orcid":"https://orcid.org/0000-0002-2122-2580"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"funder","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Julien Fageot","raw_affiliation_strings":["School of Computer and Communication Sciences, AudioVisual Communications Laboratory, Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL) , Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"School of Computer and Communication Sciences, AudioVisual Communications Laboratory, Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL) , Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]}],"institution_assertions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5034638851"],"corresponding_institution_ids":["https://openalex.org/I1303153112"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.137,"has_fulltext":true,"fulltext_origin":"pdf","cited_by_count":1,"citation_normalized_percentile":{"value":0.352159,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":59,"max":69},"biblio":{"volume":"38","issue":"11","first_page":"3146","last_page":"3148"},"is_retracted":false,"is_paratext":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.998,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.998,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9934,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.987,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.75883114},{"id":"https://openalex.org/keywords/template-matching","display_name":"Template matching","score":0.69955635},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.46723443}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7954649},{"id":"https://openalex.org/C16345878","wikidata":"https://www.wikidata.org/wiki/Q107472979","display_name":"Orientation (vector space)","level":2,"score":0.7684226},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.75883114},{"id":"https://openalex.org/C158096908","wikidata":"https://www.wikidata.org/wiki/Q3983303","display_name":"Template matching","level":3,"score":0.69955635},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6156088},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.5963608},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.53977627},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.53245956},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5217058},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.48080745},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4776334},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.46723443},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32068813},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.102932215},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.07044572},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":"","qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac270","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false},{"is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/294172","pdf_url":"https://infoscience.epfl.ch/record/294172/files/uhlmann2202.pdf","source":{"id":"https://openalex.org/S4306400488","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"http://arodes.hes-so.ch/record/10348","pdf_url":"https://arodes.hes-so.ch/record/10348/files/Depeursinge_2022_steerndetect.pdf","source":{"id":"https://openalex.org/S4306402432","display_name":"ArODES (HES-SO (https://www.hes-so.ch/))","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I4210088449","host_organization_name":"HES-SO Gen\u00e8ve","host_organization_lineage":["https://openalex.org/I4210088449"],"host_organization_lineage_names":["HES-SO Gen\u00e8ve"],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9154219","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35435214","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false}],"best_oa_location":{"is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/294172","pdf_url":"https://infoscience.epfl.ch/record/294172/files/uhlmann2202.pdf","source":{"id":"https://openalex.org/S4306400488","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true},"sustainable_development_goals":[],"grants":[{"funder":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","award_id":"P400P2_194364"},{"funder":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","award_id":"200020_184646/1"},{"funder":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","award_id":"205320_179069"}],"datasets":[],"versions":[],"referenced_works_count":5,"referenced_works":["https://openalex.org/W2143623375","https://openalex.org/W2397071937","https://openalex.org/W3022662194","https://openalex.org/W3154498115","https://openalex.org/W3155241911"],"related_works":["https://openalex.org/W631546281","https://openalex.org/W47352601","https://openalex.org/W4287378204","https://openalex.org/W4240705470","https://openalex.org/W2981957539","https://openalex.org/W2945311252","https://openalex.org/W2802511870","https://openalex.org/W2545422590","https://openalex.org/W2403654386","https://openalex.org/W2372581239"],"abstract_inverted_index":{"Rotated":[0],"template":[1,63,76],"matching":[2],"is":[3],"an":[4,41,101],"efficient":[5],"and":[6,71,108],"versatile":[7],"algorithm":[8,48],"to":[9,49,75,80],"analyze":[10],"microscopy":[11],"images,":[12],"as":[13,22],"it":[14,87],"automates":[15],"the":[16,81,84,93],"detection":[17],"of":[18,52,83,95],"stereotypical":[19],"structures,":[20],"such":[21],"organelles":[23],"that":[24],"can":[25],"appear":[26],"at":[27,54,114],"any":[28,55],"orientation.":[29],"Its":[30],"performance":[31],"however":[32],"quickly":[33],"degrades":[34],"in":[35,64,92],"noisy":[36],"image":[37,85],"data.We":[38],"introduce":[39],"Steer'n'Detect,":[40],"ImageJ":[42],"plugin":[43,98],"implementing":[44],"a":[45,61,69],"recently":[46],"published":[47],"detect":[50],"patterns":[51],"interest":[53],"orientation":[56],"with":[57,100],"high":[58],"accuracy":[59],"from":[60],"single":[62],"2D":[65],"images.":[66],"Steer'n'Detect":[67],"provides":[68],"faster":[70],"more":[72],"robust":[73],"substitute":[74],"matching.":[77],"By":[78],"adapting":[79],"statistics":[82],"background,":[86],"guarantees":[88],"accurate":[89],"results":[90,106],"even":[91],"presence":[94],"noise.":[96],"The":[97],"comes":[99],"intuitive":[102],"user":[103],"interface":[104],"facilitating":[105],"analysis":[107],"further":[109],"post-processing.https://github.com/Biomedical-Imaging-Group/Steer-n-Detect.Supplementary":[110],"data":[111],"are":[112],"available":[113],"Bioinformatics":[115],"online.":[116]},"abstract_inverted_index_v3":null,"cited_by_api_url":"https://api.openalex.org/works?filter=cites:W4224247224","counts_by_year":[{"year":2023,"cited_by_count":1}],"updated_date":"2025-04-22T08:45:50.619276","created_date":"2022-04-26"}