乐胖代购免代理版

{"id":"https://openalex.org/W3043322546","doi":"https://doi.org/10.1093/bioinformatics/btaa440","title":"TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats","display_name":"TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats","publication_year":2020,"publication_date":"2020-05-04","ids":{"openalex":"https://openalex.org/W3043322546","doi":"https://doi.org/10.1093/bioinformatics/btaa440","mag":"3043322546","pmid":"https://pubmed.ncbi.nlm.nih.gov/32657355","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/7355294"},"language":"en","primary_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa440","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i75/33488695/btaa440.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true},"type":"article","type_crossref":"journal-article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i75/33488695/btaa440.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066700628","display_name":"Alla Mikheenko","orcid":"https://orcid.org/0000-0003-3400-9719"},"institutions":[{"id":"https://openalex.org/I172901346","display_name":"St Petersburg University","ror":"https://ror.org/023znxa73","country_code":"RU","type":"funder","lineage":["https://openalex.org/I172901346"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Alla Mikheenko","raw_affiliation_strings":["Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, Saint Petersburg State University , Saint Petersburg 199034, Russia"],"affiliations":[{"raw_affiliation_string":"Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, Saint Petersburg State University , Saint Petersburg 199034, Russia","institution_ids":["https://openalex.org/I172901346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078002589","display_name":"Andrey V. Bzikadze","orcid":"https://orcid.org/0000-0002-7928-7950"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"funder","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrey V Bzikadze","raw_affiliation_strings":["Graduate Program in Bioinformatics and Systems Biology, University of California , San Diego, CA 92093, USA"],"affiliations":[{"raw_affiliation_string":"Graduate Program in Bioinformatics and Systems Biology, University of California , San Diego, CA 92093, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030895995","display_name":"Alexey Gurevich","orcid":"https://orcid.org/0000-0002-5855-3519"},"institutions":[{"id":"https://openalex.org/I172901346","display_name":"St Petersburg University","ror":"https://ror.org/023znxa73","country_code":"RU","type":"funder","lineage":["https://openalex.org/I172901346"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Alexey Gurevich","raw_affiliation_strings":["Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, Saint Petersburg State University , Saint Petersburg 199034, Russia"],"affiliations":[{"raw_affiliation_string":"Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, Saint Petersburg State University , Saint Petersburg 199034, Russia","institution_ids":["https://openalex.org/I172901346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045267050","display_name":"Karen H. Miga","orcid":"https://orcid.org/0000-0002-3670-4507"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"funder","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Karen H Miga","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California , Santa Cruz, CA, USA"],"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California , Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027480961","display_name":"Pavel A. Pevzner","orcid":"https://orcid.org/0000-0002-0418-165X"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"funder","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pavel A Pevzner","raw_affiliation_strings":["Department of Computer Science and Engineering, University of California , San Diego, CA 92093, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of California , San Diego, CA 92093, USA","institution_ids":["https://openalex.org/I36258959"]}]}],"institution_assertions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5066700628"],"corresponding_institution_ids":["https://openalex.org/I172901346"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.237,"has_fulltext":false,"cited_by_count":56,"citation_normalized_percentile":{"value":0.758808,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"36","issue":"Supplement_1","first_page":"i75","last_page":"i83"},"is_retracted":false,"is_paratext":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9967,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9967,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9532,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9332,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tandem","display_name":"Tandem","score":0.4588791}],"concepts":[{"id":"https://openalex.org/C27149982","wikidata":"https://www.wikidata.org/wiki/Q3456514","display_name":"Tandem repeat","level":4,"score":0.7135246},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.57703644},{"id":"https://openalex.org/C61320498","wikidata":"https://www.wikidata.org/wiki/Q265193","display_name":"Microsatellite","level":4,"score":0.5589308},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.5352123},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.50116706},{"id":"https://openalex.org/C2777814067","wikidata":"https://www.wikidata.org/wiki/Q1752317","display_name":"Tandem","level":2,"score":0.4588791},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34299543},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23160782},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.09928274},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07316789},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.054723173},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.0},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020080","descriptor_name":"Tandem Repeat Sequences","qualifier_ui":"","qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa440","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i75/33488695/btaa440.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"https://europepmc.org/articles/pmc7355294","pdf_url":"https://europepmc.org/articles/pmc7355294?pdf=render","source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":["European Bioinformatics Institute"],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7355294","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"https://doi.org/10.1101/2019.12.23.887158","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2019/12/23/2019.12.23.887158.full.pdf","source":null,"license":"cc-by-nd","license_id":"https://openalex.org/licenses/cc-by-nd","version":"submittedVersion","is_accepted":false,"is_published":false},{"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32657355","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false}],"best_oa_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa440","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i75/33488695/btaa440.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true},"sustainable_development_goals":[],"grants":[{"funder":"https://openalex.org/F4320322515","funder_display_name":"Saint Petersburg State University","award_id":"51555639"}],"datasets":[],"versions":[],"referenced_works_count":58,"referenced_works":["https://openalex.org/W1519765314","https://openalex.org/W1955667810","https://openalex.org/W1978844013","https://openalex.org/W1983403167","https://openalex.org/W1991008526","https://openalex.org/W2016200633","https://openalex.org/W2063407875","https://openalex.org/W2078769454","https://openalex.org/W2083864663","https://openalex.org/W2095680943","https://openalex.org/W2098531465","https://openalex.org/W2103441770","https://openalex.org/W2107772251","https://openalex.org/W2111829451","https://openalex.org/W2120902911","https://openalex.org/W2124561138","https://openalex.org/W2124985265","https://openalex.org/W2127768708","https://openalex.org/W2130493916","https://openalex.org/W2144570967","https://openalex.org/W2155628349","https://openalex.org/W2159163649","https://openalex.org/W2159428741","https://openalex.org/W2175526948","https://openalex.org/W2179507357","https://openalex.org/W2194172909","https://openalex.org/W2227356030","https://openalex.org/W2341599515","https://openalex.org/W2538143681","https://openalex.org/W2562683361","https://openalex.org/W2575750030","https://openalex.org/W2580040938","https://openalex.org/W2586614683","https://openalex.org/W2587990010","https://openalex.org/W2611922188","https://openalex.org/W2782547666","https://openalex.org/W2788228074","https://openalex.org/W2789843538","https://openalex.org/W2790220607","https://openalex.org/W2808352813","https://openalex.org/W2905151046","https://openalex.org/W2944627014","https://openalex.org/W2950266744","https://openalex.org/W2950354111","https://openalex.org/W2952167528","https://openalex.org/W2952609831","https://openalex.org/W2952679261","https://openalex.org/W2952957075","https://openalex.org/W2967476242","https://openalex.org/W2973089210","https://openalex.org/W2985175171","https://openalex.org/W2992976869","https://openalex.org/W2997049515","https://openalex.org/W3012009036","https://openalex.org/W3042374389","https://openalex.org/W3042599249","https://openalex.org/W3049406222","https://openalex.org/W4394666350"],"related_works":["https://openalex.org/W4323262585","https://openalex.org/W4236068647","https://openalex.org/W4223943358","https://openalex.org/W2385170838","https://openalex.org/W2183689409","https://openalex.org/W2121546023","https://openalex.org/W2058825091","https://openalex.org/W2029130118","https://openalex.org/W2023186083","https://openalex.org/W1654308148"],"abstract_inverted_index":{"Abstract":[0],"Motivation":[1],"Extra-long":[2],"tandem":[3],"repeats":[4],"(ETRs)":[5],"are":[6,43,134],"widespread":[7],"in":[8,16,113],"eukaryotic":[9],"genomes":[10],"and":[11,93,101,127],"play":[12],"an":[13,60],"important":[14],"role":[15],"fundamental":[17],"cellular":[18],"processes,":[19],"such":[20,35],"as":[21],"chromosome":[22],"segregation.":[23],"Although":[24],"emerging":[25],"long-read":[26],"technologies":[27],"have":[28],"enabled":[29],"ETR":[30,71,99,114],"assemblies,":[31],"the":[32,52,80,85,94,119],"accuracy":[33],"of":[34,54,123],"assemblies":[36,100,115,122],"is":[37,64],"difficult":[38],"to":[39,57,68,91],"evaluate":[40],"since":[41,51],"there":[42],"no":[44],"tools":[45],"for":[46,88,97],"their":[47,102],"quality":[48,103],"assessment.":[49,104],"Moreover,":[50],"mapping":[53,89],"error-prone":[55],"reads":[56,90],"ETRs":[58,92],"remains":[59],"open":[61],"problem,":[62],"it":[63],"not":[65,109],"clear":[66],"how":[67],"polish":[69],"draft":[70],"assemblies.":[72],"Results":[73],"To":[74],"address":[75],"these":[76],"problems,":[77],"we":[78],"developed":[79],"TandemTools":[81,108],"software":[82],"that":[83,107],"includes":[84],"TandemMapper":[86],"tool":[87,96],"TandemQUAST":[95],"polishing":[98],"We":[105],"demonstrate":[106],"only":[110],"reveals":[111],"errors":[112],"but":[116],"also":[117],"improves":[118],"recently":[120],"generated":[121],"human":[124],"centromeres.":[125],"Availability":[126],"implementation":[128],"https://github.com/ablab/TandemTools.":[129],"Supplementary":[130,132],"information":[131],"data":[133],"available":[135],"at":[136],"Bioinformatics":[137],"online.":[138]},"abstract_inverted_index_v3":null,"cited_by_api_url":"https://api.openalex.org/works?filter=cites:W3043322546","counts_by_year":[{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":10}],"updated_date":"2025-04-17T07:50:32.616790","created_date":"2020-07-23"}