{"id":"https://openalex.org/W2480508321","doi":"https://doi.org/10.1007/978-3-319-38827-4_1","title":"The Trees in the Peaks","display_name":"The Trees in the Peaks","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2480508321","doi":"https://doi.org/10.1007/978-3-319-38827-4_1","mag":"2480508321"},"language":"en","primary_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-319-38827-4_1","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319965","https://openalex.org/P4310319900"],"host_organization_lineage_names":["Springer Nature","Springer Science+Business Media"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true},"type":"book-chapter","type_crossref":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1007/978-3-319-38827-4_1","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089707881","display_name":"David Sankoff","orcid":"https://orcid.org/0000-0001-8415-5189"},"institutions":[{"id":"https://openalex.org/I153718931","display_name":"University of Ottawa","ror":"https://ror.org/03c4mmv16","country_code":"CA","type":"funder","lineage":["https://openalex.org/I153718931"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"David Sankoff","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, K1N 6N5, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, K1N 6N5, Canada","institution_ids":["https://openalex.org/I153718931"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106265672","display_name":"Chunfang Zheng","orcid":"https://orcid.org/0000-0003-4205-4501"},"institutions":[{"id":"https://openalex.org/I153718931","display_name":"University of Ottawa","ror":"https://ror.org/03c4mmv16","country_code":"CA","type":"funder","lineage":["https://openalex.org/I153718931"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Chunfang Zheng","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, K1N 6N5, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, K1N 6N5, Canada","institution_ids":["https://openalex.org/I153718931"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017848789","display_name":"Eric Lyons","orcid":"https://orcid.org/0000-0002-3348-8845"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"funder","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric Lyons","raw_affiliation_strings":["School of Plant Science, Bio5 Institute, University of Arizona, Tucson, AZ, 85721, USA"],"affiliations":[{"raw_affiliation_string":"School of Plant Science, Bio5 Institute, University of Arizona, Tucson, AZ, 85721, USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076003856","display_name":"Haibao Tang","orcid":"https://orcid.org/0000-0002-3460-8570"},"institutions":[{"id":"https://openalex.org/I61057504","display_name":"Fujian Agriculture and Forestry University","ror":"https://ror.org/04kx2sy84","country_code":"CN","type":"funder","lineage":["https://openalex.org/I61057504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haibao Tang","raw_affiliation_strings":["Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China"],"affiliations":[{"raw_affiliation_string":"Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China","institution_ids":["https://openalex.org/I61057504"]}]}],"institution_assertions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":{"value":5000,"currency":"EUR","value_usd":5392},"fwci":4.118,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.699421,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":79,"max":81},"biblio":{"volume":null,"issue":null,"first_page":"3","last_page":"14"},"is_retracted":false,"is_paratext":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9979,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9979,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9973,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9957,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.6763141},{"id":"https://openalex.org/keywords/divergence","display_name":"Divergence (linguistics)","score":0.6075938},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5698613}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.78250074},{"id":"https://openalex.org/C2776838516","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.6763141},{"id":"https://openalex.org/C207390915","wikidata":"https://www.wikidata.org/wiki/Q1230525","display_name":"Divergence (linguistics)","level":2,"score":0.6075938},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5698613},{"id":"https://openalex.org/C7602840","wikidata":"https://www.wikidata.org/wiki/Q746284","display_name":"Gene duplication","level":3,"score":0.558888},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.55121773},{"id":"https://openalex.org/C97428945","wikidata":"https://www.wikidata.org/wiki/Q15305109","display_name":"Fractionation","level":2,"score":0.50780517},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4449767},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.39728492},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.38006753},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3698079},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15336826},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13239503},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.07921392},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.06187904},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-319-38827-4_1","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319965","https://openalex.org/P4310319900"],"host_organization_lineage_names":["Springer Nature","Springer Science+Business Media"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true}],"best_oa_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-319-38827-4_1","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_indexed_in_scopus":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319965","https://openalex.org/P4310319900"],"host_organization_lineage_names":["Springer Nature","Springer Science+Business Media"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true},"sustainable_development_goals":[{"score":0.6,"id":"https://metadata.un.org/sdg/15","display_name":"Life on land"}],"grants":[],"datasets":[],"versions":[],"referenced_works_count":15,"referenced_works":["https://openalex.org/W1494075612","https://openalex.org/W1907059778","https://openalex.org/W1988832105","https://openalex.org/W1991552254","https://openalex.org/W2008029169","https://openalex.org/W2018991353","https://openalex.org/W2075436975","https://openalex.org/W2084477034","https://openalex.org/W2109083260","https://openalex.org/W2141550398","https://openalex.org/W2146384771","https://openalex.org/W2164094120","https://openalex.org/W2166783246","https://openalex.org/W2591420526","https://openalex.org/W2993708662"],"related_works":["https://openalex.org/W4388014327","https://openalex.org/W4328050637","https://openalex.org/W4234514162","https://openalex.org/W2367076742","https://openalex.org/W2365509895","https://openalex.org/W2349742942","https://openalex.org/W2128467432","https://openalex.org/W2115382138","https://openalex.org/W2084825432","https://openalex.org/W1883409887"],"abstract_inverted_index":{"We":[0,22,44,98],"suggest":[1],"a":[2,24,62,69,106],"gene-tree/species-tree":[3],"approach":[4],"to":[5,12,96],"speciation":[6],"and":[7,35,92,116],"whole":[8],"genome":[9],"duplication":[10],"(WGD)":[11],"resolve":[13],"the":[14,30,38,55,81,86,100],"occurrence":[15],"of":[16,28,32,41,57,64,72,80,88,102],"these":[17],"events":[18],"in":[19,54],"phylogenetic":[20],"analysis.":[21,43],"propose":[23],"more":[25],"principled":[26],"way":[27],"estimating":[29],"parameters":[31],"gene":[33,59,75,110],"divergence":[34],"fractionation":[36],"than":[37],"standard":[39],"mixture":[40],"normals":[42],"formulate":[45],"an":[46],"algorithm":[47],"for":[48,61,108],"resolving":[49],"data":[50,76,93],"on":[51],"local":[52],"peaks":[53],"distributions":[56],"duplicate":[58,74],"similarities":[60],"number":[63],"related":[65],"genomes.":[66],"Illustrating":[67],"with":[68],"comprehensive":[70],"analysis":[71],"WGD-origin":[73],"from":[77],"six":[78],"members":[79],"family":[82],"Brassicaceae,":[83],"we":[84],"discuss":[85],"effects":[87],"variable":[89],"evolutionary":[90],"rates":[91],"degradation":[94],"due":[95],"fractionation.":[97,117],"introduce":[99],"notion":[101],"peak":[103],"tree,":[104],"as":[105],"template":[107],"all":[109],"trees":[111],"evolving":[112],"by":[113],"speciation,":[114],"WGD":[115]},"abstract_inverted_index_v3":null,"cited_by_api_url":"https://api.openalex.org/works?filter=cites:W2480508321","counts_by_year":[{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":2}],"updated_date":"2025-04-21T15:01:50.218335","created_date":"2016-08-23"}