{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,6,28]],"date-time":"2024-06-28T10:35:33Z","timestamp":1719570933466},"reference-count":21,"publisher":"IGI Global","issue":"1","license":[{"start":{"date-parts":[[2018,1,1]],"date-time":"2018-01-01T00:00:00Z","timestamp":1514764800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0\/deed.en_US"},{"start":{"date-parts":[[2018,1,1]],"date-time":"2018-01-01T00:00:00Z","timestamp":1514764800000},"content-version":"am","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0\/deed.en_US"},{"start":{"date-parts":[[2018,1,1]],"date-time":"2018-01-01T00:00:00Z","timestamp":1514764800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0\/deed.en_US"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,1,1]]},"abstract":"

Recently, the number and heterogeneity of life science datasets published on the Web have increased significantly. However, biomedical scientists face numerous serious difficulties finding, using and publishing useful databases. To address these issues, the authors developed a Resource Description Framework-based database platform, called the RIKEN MetaDatabase (http:\/\/metadb.riken.jp), that allows biologists to develop, publish and integrate multiple databases easily. The platform manages the metadata of both research and individual data described using standardised vocabularies and ontologies, and has a simple browser-based graphical user interface to view data including tabular and graphical forms. The platform was released in April 2015, and 113 databases, including mammalian, plant, bioresource and image databases, with 26 ontologies have been published using this platform as of January 2017. This paper describes the technical knowledge obtained through the development and operation of the RIKEN MetaDatabase to accelerate life science data distribution.<\/p>","DOI":"10.4018\/ijswis.2018010106","type":"journal-article","created":{"date-parts":[[2017,11,30]],"date-time":"2017-11-30T17:50:41Z","timestamp":1512064241000},"page":"140-164","source":"Crossref","is-referenced-by-count":11,"title":["RIKEN MetaDatabase"],"prefix":"10.4018","volume":"14","author":[{"given":"Norio","family":"Kobayashi","sequence":"first","affiliation":[{"name":"Advanced Center for Computing and Communication (ACCC), BioResource Center, RIKEN CLST-JEOL Collaboration Center, RIKEN, Japan"}]},{"given":"Satoshi","family":"Kume","sequence":"additional","affiliation":[{"name":"RIKEN Center for Life Science Technologies, RIKEN CLST-JEOL Collaboration Center, RIKEN Compass to Healthy Life Research Complex Program, RIKEN, Japan"}]},{"given":"Kai","family":"Lenz","sequence":"additional","affiliation":[{"name":"Advanced Center for Computing and Communication (ACCC), RIKEN, Japan"}]},{"given":"Hiroshi","family":"Masuya","sequence":"additional","affiliation":[{"name":"BioResource Center, Advanced Center for Computing and Communication (ACCC), RIKEN, Japan"}]}],"member":"2432","reference":[{"key":"IJSWIS.2018010106-0","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.1896"},{"key":"IJSWIS.2018010106-1","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2008.03.004"},{"key":"IJSWIS.2018010106-2","doi-asserted-by":"publisher","DOI":"10.1126\/science.1257998"},{"key":"IJSWIS.2018010106-3","doi-asserted-by":"publisher","DOI":"10.1038\/nature19356"},{"key":"IJSWIS.2018010106-4","doi-asserted-by":"publisher","DOI":"10.1038\/nature13182"},{"key":"IJSWIS.2018010106-5","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr538"},{"key":"IJSWIS.2018010106-6","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-313X.2006.02924.x"},{"key":"IJSWIS.2018010106-7","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2015.06.054"},{"key":"IJSWIS.2018010106-8","article-title":"Development of an Ontology for an Integrated Image Analysis Platform to enable Global Sharing of Microscopy Imaging Data.","author":"S.Kume","year":"2016","journal-title":"Proceeding of 15th International Semantic Web Conference, poster session"},{"key":"IJSWIS.2018010106-9","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-540-30475-3_37"},{"key":"IJSWIS.2018010106-10","doi-asserted-by":"publisher","DOI":"10.1016\/j.nicl.2016.09.016"},{"key":"IJSWIS.2018010106-11","doi-asserted-by":"publisher","DOI":"10.1538\/expanim.59.1"},{"key":"IJSWIS.2018010106-12","doi-asserted-by":"publisher","DOI":"10.1101\/gr.160325.113"},{"key":"IJSWIS.2018010106-13","doi-asserted-by":"publisher","DOI":"10.1107\/S0021889809012370"},{"key":"IJSWIS.2018010106-14","doi-asserted-by":"crossref","unstructured":"Takahashi, K., Mizuno, K., Sasaki, A.T., Wada, Y., Tanaka, M., Ishii, A., Tajima K., Tsuyuguchi, N., Watanabe K., Zeki S., & Watanabe Y. (2015). Imaging the passionate stage of romantic love by dopamine dynamics. Frontiers in Human Neuroscience, 09 April 2015.","DOI":"10.3389\/fnhum.2015.00191"},{"key":"IJSWIS.2018010106-15","first-page":"20","article-title":"Research resources: Curating the new eagle-i discovery system.","author":"N.Vasilevsky","year":"2012","journal-title":"Database (Oxford)"},{"key":"IJSWIS.2018010106-16","doi-asserted-by":"crossref","unstructured":"Whetzel, P.L., Noy, N.F., Shah, N.H., Alexander, P.R., Nyulas, C., Tudorache, T., & Musen, M.A. (2011). BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. Nucleic Acids Res. 39(Web Server issue), W541-545.","DOI":"10.1093\/nar\/gkr469"},{"key":"IJSWIS.2018010106-17","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr312"},{"key":"IJSWIS.2018010106-18","doi-asserted-by":"crossref","unstructured":"Yamaguchi, A., Kozaki, K., Lenz, K., Wu, H., Yamamoto, Y., & Kobayashi, N. (2015). Efficiently finding paths between classes to build a SPARQL query for life-science databases. The 5th Joint International Conference (JIST 2015), LNCS, 9544, 321-330.","DOI":"10.1007\/978-3-319-31676-5_24"},{"key":"IJSWIS.2018010106-19","doi-asserted-by":"publisher","DOI":"10.1538\/expanim.59.115"},{"key":"IJSWIS.2018010106-20","doi-asserted-by":"publisher","DOI":"10.1538\/expanim.58.85"}],"container-title":["International Journal on Semantic Web and Information Systems"],"original-title":[],"language":"ng","link":[{"URL":"https:\/\/www.igi-global.com\/viewtitle.aspx?TitleId=193932","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,5,6]],"date-time":"2022-05-06T21:52:13Z","timestamp":1651873933000},"score":1,"resource":{"primary":{"URL":"https:\/\/services.igi-global.com\/resolvedoi\/resolve.aspx?doi=10.4018\/IJSWIS.2018010106"}},"subtitle":["A Database Platform for Health Care and Life Sciences as a Microcosm of Linked Open Data Cloud"],"short-title":[],"issued":{"date-parts":[[2018,1,1]]},"references-count":21,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2018,1]]}},"URL":"https:\/\/doi.org\/10.4018\/ijswis.2018010106","relation":{},"ISSN":["1552-6283","1552-6291"],"issn-type":[{"value":"1552-6283","type":"print"},{"value":"1552-6291","type":"electronic"}],"subject":[],"published":{"date-parts":[[2018,1,1]]}}}