{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,8,4]],"date-time":"2024-08-04T12:36:27Z","timestamp":1722774987398},"reference-count":10,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2011,5,12]],"date-time":"2011-05-12T00:00:00Z","timestamp":1305158400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2011,12]]},"DOI":"10.1186\/1471-2105-12-150","type":"journal-article","created":{"date-parts":[[2011,5,12]],"date-time":"2011-05-12T19:18:48Z","timestamp":1305227928000},"source":"Crossref","is-referenced-by-count":3,"title":["A user-friendly web portal for T-Coffee on supercomputers"],"prefix":"10.1186","volume":"12","author":[{"given":"Josep","family":"Rius","sequence":"first","affiliation":[]},{"given":"Fernando","family":"Cores","sequence":"additional","affiliation":[]},{"given":"Francesc","family":"Solsona","sequence":"additional","affiliation":[]},{"given":"Jano I","family":"van Hemert","sequence":"additional","affiliation":[]},{"given":"Jos","family":"Koetsier","sequence":"additional","affiliation":[]},{"given":"Cedric","family":"Notredame","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2011,5,12]]},"reference":[{"key":"4520_CR1","first-page":"248","volume-title":"Proceedings of ISCA PDCS-2007","author":"J Zola","year":"2007","unstructured":"Zola J, Yang X, Rospondek S, Aluru S: Parallel T-Coffee: A Parallel Multiple Sequence Aligner. Proceedings of ISCA PDCS-2007 2007, 248\u2013253."},{"key":"4520_CR2","volume-title":"Proceedings of the IWPLS09 International Workshop on Portals for Life Sciences","author":"J Koetsier","year":"2009","unstructured":"Koetsier J, van Hemert JI: Rapid development of computational science portals. Proceedings of the IWPLS09 International Workshop on Portals for Life Sciences 2009."},{"issue":"1","key":"4520_CR3","doi-asserted-by":"publisher","first-page":"205","DOI":"10.1006\/jmbi.2000.4042","volume":"302","author":"C Notredame","year":"2000","unstructured":"Notredame C, Higgins D, Heringa J: T-Coffee: A Novel Method for Fast, Accurate Multiple Sequence Alignment. Molecular Biology 2000, 302(1):205\u2013217. 10.1006\/jmbi.2000.4042","journal-title":"Molecular Biology"},{"issue":"5","key":"4520_CR4","doi-asserted-by":"publisher","first-page":"407","DOI":"10.1093\/bioinformatics\/14.5.407","volume":"14","author":"C Notredame","year":"1998","unstructured":"Notredame C, Holm L, Higgins D: COFFEE: an objective function for multiple sequence alignments. Bioinformatics 1998, 14(5):407\u2013422. 10.1093\/bioinformatics\/14.5.407","journal-title":"Bioinformatics"},{"issue":"3","key":"4520_CR5","doi-asserted-by":"publisher","first-page":"368","DOI":"10.1016\/j.sbi.2006.04.004","volume":"16","author":"RC Edgar","year":"2006","unstructured":"Edgar RC, Batzoglou S: Multiple sequence alignment. Current opinion in structural biology 2006, 16(3):368\u2013373. 10.1016\/j.sbi.2006.04.004","journal-title":"Current opinion in structural biology"},{"key":"4520_CR6","unstructured":"MPI-2: Message-Passing Interface Standard version 2[\n http:\/\/www.open-mpi.org\n \n ]"},{"issue":"15","key":"4520_CR7","doi-asserted-by":"publisher","first-page":"1903","DOI":"10.1093\/bioinformatics\/btq304","volume":"26","author":"P Di Tommaso","year":"2010","unstructured":"Di Tommaso P, Orobitg M, Guirado F, Cores F, Espinosa T, Notredame C: Cloud-Coffee: implementation of a parallel consistency-based multiple alignment algorithm in the T-Coffee package and its benchmarking on the Amazon Elastic-Cloud. Bioinformatics 2010, 26(15):1903\u20131904. 10.1093\/bioinformatics\/btq304","journal-title":"Bioinformatics"},{"key":"4520_CR8","first-page":"1","volume-title":"The Journal of Supercomputing","author":"M Orobitg","year":"2009","unstructured":"Orobitg M, Guirado F, Notredame C, Cores F: Exploiting parallelism on progressive alignment methods. The Journal of Supercomputing 2009, 1\u20139."},{"issue":"2","key":"4520_CR9","doi-asserted-by":"publisher","first-page":"330","DOI":"10.1101\/gr.2821705","volume":"15","author":"CB Do","year":"2005","unstructured":"Do CB, Mahabhashyam MSP, Brudno M, Batzoglou S: ProbCons: Probabilistic consistency-based multiple sequence alignment. Genome Res 2005, 15(2):330\u2013340. 10.1101\/gr.2821705","journal-title":"Genome Res"},{"key":"4520_CR10","volume-title":"The Pfam protein families database","author":"RD Finn","year":"2008","unstructured":"Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer ELL, Bateman A: The Pfam protein families database. 2008."}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-12-150.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-12-150\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-12-150.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,22]],"date-time":"2019-01-22T14:36:38Z","timestamp":1548167798000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-12-150"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,5,12]]},"references-count":10,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2011,12]]}},"alternative-id":["4520"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-12-150","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,5,12]]},"article-number":"150"}}