{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,8,6]],"date-time":"2024-08-06T11:55:34Z","timestamp":1722945334812},"reference-count":15,"publisher":"MIT Press - Journals","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["TACL"],"published-print":{"date-parts":[[2014,12]]},"abstract":" This article discusses the requirements of a formal specification for the annotation of temporal information in clinical narratives. We discuss the implementation and extension of ISO-TimeML for annotating a corpus of clinical notes, known as the THYME corpus. To reflect the information task and the heavily inference-based reasoning demands in the domain, a new annotation guideline has been developed, \u201cthe THYME Guidelines to ISO-TimeML (THYME-TimeML)\u201d. To clarify what relations merit annotation, we distinguish between linguistically-derived and inferentially-derived temporal orderings in the text. We also apply a top performing TempEval 2013 system against this new resource to measure the difficulty of adapting systems to the clinical domain. The corpus is available to the community and has been proposed for use in a SemEval 2015 task. <\/jats:p>","DOI":"10.1162\/tacl_a_00172","type":"journal-article","created":{"date-parts":[[2018,12,28]],"date-time":"2018-12-28T15:43:26Z","timestamp":1546011806000},"page":"143-154","source":"Crossref","is-referenced-by-count":88,"title":["Temporal Annotation in the Clinical Domain"],"prefix":"10.1162","volume":"2","author":[{"suffix":"IV","given":"William F.","family":"Styler","sequence":"first","affiliation":[{"name":"Department of Linguistics, University of Colorado at Boulder"}]},{"given":"Steven","family":"Bethard","sequence":"additional","affiliation":[{"name":"Department of Computer and Information Sciences, University of Alabama at Birmingham"}]},{"given":"Sean","family":"Finan","sequence":"additional","affiliation":[{"name":"Children\u2019s Hospital Boston Informatics Program and Harvard Medical School"}]},{"given":"Martha","family":"Palmer","sequence":"additional","affiliation":[{"name":"Department of Linguistics, University of Colorado at Boulder"}]},{"given":"Sameer","family":"Pradhan","sequence":"additional","affiliation":[{"name":"Children\u2019s Hospital Boston Informatics Program and Harvard Medical School"}]},{"given":"Piet C","family":"de Groen","sequence":"additional","affiliation":[{"name":"Mayo Clinic College of Medicine, Mayo Clinic, Rochester, MN"}]},{"given":"Brad","family":"Erickson","sequence":"additional","affiliation":[{"name":"Mayo Clinic College of Medicine, Mayo Clinic, Rochester, MN"}]},{"given":"Timothy","family":"Miller","sequence":"additional","affiliation":[{"name":"Children\u2019s Hospital Boston Informatics Program and Harvard Medical School"}]},{"given":"Chen","family":"Lin","sequence":"additional","affiliation":[{"name":"Children\u2019s Hospital Boston Informatics Program and Harvard Medical School"}]},{"given":"Guergana","family":"Savova","sequence":"additional","affiliation":[{"name":"Children\u2019s Hospital Boston Informatics Program and Harvard Medical School"}]},{"given":"James","family":"Pustejovsky","sequence":"additional","affiliation":[{"name":"Department of Computer Science, Brandeis University"}]}],"member":"281","reference":[{"issue":"11","key":"p_1","doi-asserted-by":"crossref","first-page":"832","DOI":"10.1145\/182.358434","volume":"26","author":"Allen James F","year":"1983","journal-title":"Communications of the ACM"},{"issue":"5","key":"p_7","doi-asserted-by":"crossref","first-page":"323","DOI":"10.1136\/jamia.1995.96073835","volume":"2","author":"Dolin Robert H","year":"1995","journal-title":"Journal of the American Medical Informatics Association"},{"issue":"3","key":"p_8","doi-asserted-by":"crossref","first-page":"354","DOI":"10.1197\/jamia.M2922","volume":"16","author":"Hripcsak George","year":"2009","journal-title":"Journal of the American Medical Informatics Association"},{"key":"p_14","first-page":"128","volume":"35","author":"Meystre St\u00e9phane M","year":"2008","journal-title":"Yearb Med Inform"},{"issue":"2","key":"p_19","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1007\/s10579-005-7882-7","volume":"39","author":"Pustejovsky James","year":"2005","journal-title":"Language Resources and Evaluation"},{"issue":"5","key":"p_21","doi-asserted-by":"crossref","first-page":"950","DOI":"10.1016\/j.jbi.2008.12.013","volume":"42","author":"Roberts Angus","year":"2009","journal-title":"Journal of biomedical informatics"},{"issue":"1","key":"p_23","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1002\/meet.2008.1450450278","volume":"45","author":"Sullivan Tessa","year":"2008","journal-title":"Proceedings of the American Society for Information Science and Technology"},{"key":"p_24","author":"Sun Weiyi","year":"2013","journal-title":"Journal of the American Medical Informatics Association."},{"issue":"5","key":"p_25","doi-asserted-by":"crossref","first-page":"806","DOI":"10.1136\/amiajnl-2013-001628","volume":"20","author":"Sun Weiyi","year":"2013","journal-title":"Journal of the American Medical Informatics Association"},{"issue":"3","key":"p_26","doi-asserted-by":"crossref","first-page":"362","DOI":"10.1197\/jamia.M2777","volume":"16","author":"Turchin Alexander","year":"2009","journal-title":"Journal of the American Medical Informatics Association"},{"issue":"2","key":"p_28","doi-asserted-by":"crossref","first-page":"211","DOI":"10.1007\/s10579-005-7884-5","volume":"39","author":"Verhagen Marc","year":"2005","journal-title":"Language Resources and Evaluation"},{"key":"p_29","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/1471-2105-9-1","volume":"9","author":"Vincze Veronika","year":"2008","journal-title":"BMC Bioinformatics"},{"key":"p_30","doi-asserted-by":"crossref","first-page":"141","DOI":"10.1007\/s10618-005-0361-3","volume":"10","author":"Zhao Ying","year":"2005","journal-title":"Data Mining and Knowledge Discovery"},{"issue":"6","key":"p_31","doi-asserted-by":"crossref","first-page":"1113","DOI":"10.1016\/j.jbi.2011.08.006","volume":"44","author":"Zheng Jiaping","year":"2011","journal-title":"Journal of biomedical informatics"},{"issue":"1","key":"p_32","doi-asserted-by":"crossref","first-page":"99","DOI":"10.1197\/jamia.M2467","volume":"15","author":"Zhou Li","year":"2008","journal-title":"Journal of the American Medical Informatics Association"}],"container-title":["Transactions of the Association for Computational Linguistics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.mitpressjournals.org\/doi\/pdf\/10.1162\/tacl_a_00172","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,3,12]],"date-time":"2021-03-12T21:38:52Z","timestamp":1615585132000},"score":1,"resource":{"primary":{"URL":"https:\/\/direct.mit.edu\/tacl\/article\/43304"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,12]]},"references-count":15,"alternative-id":["10.1162\/tacl_a_00172"],"URL":"https:\/\/doi.org\/10.1162\/tacl_a_00172","relation":{},"ISSN":["2307-387X"],"issn-type":[{"value":"2307-387X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,12]]}}}