{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,10,29]],"date-time":"2024-10-29T09:46:01Z","timestamp":1730195161910,"version":"3.28.0"},"reference-count":34,"publisher":"IEEE","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,8]]},"DOI":"10.1109\/ahs.2018.8541417","type":"proceedings-article","created":{"date-parts":[[2018,11,23]],"date-time":"2018-11-23T00:15:58Z","timestamp":1542932158000},"page":"233-240","source":"Crossref","is-referenced-by-count":2,"title":["k-mer Counting with FPGAs and HMC In-Memory Operations"],"prefix":"10.1109","author":[{"given":"Rick","family":"Wertenbroek","sequence":"first","affiliation":[]},{"given":"Yann","family":"Thoma","sequence":"additional","affiliation":[]}],"member":"263","reference":[{"journal-title":"Stratix 10 MX devices solve the memory bandwidth challenge","year":"2017","key":"ref33"},{"journal-title":"SB-801 Single Board HPC Specifications","year":"2017","key":"ref32"},{"journal-title":"SRX016231 Illumina sequencing of human HapMap NA18507 genomic paired-end library","year":"2017","key":"ref31"},{"key":"ref30","doi-asserted-by":"crossref","first-page":"1767","DOI":"10.1093\/nar\/gkp1137","article-title":"The Sanger FASTQ file format for sequences with quality scores, and the Solexa\/Illumina FASTQ variants","volume":"38","author":"cock","year":"2010","journal-title":"Nucleic Acids Res"},{"journal-title":"Virtex UltraScale + FPGA augmented with copackaged HBM DRAM operating at full speed (460Gbytes\/sec) error-free on the very first day of silicon bringup","year":"2018","key":"ref34"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1093\/bfgp\/elr035"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1101\/gr.126953.111"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1186\/1748-7188-8-22"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt020"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1186\/s13015-017-0097-9"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1016\/j.gpb.2015.08.002"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btx304"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1145\/362686.362692"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-12-333"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr011"},{"journal-title":"AC-510 ultrascale-based superprocessor with hybrid memory cube","year":"2017","key":"ref28"},{"key":"ref4","article-title":"Oxford nanopore sequencing in a researchbased undergraduate course","author":"zeng","year":"2017","journal-title":"BioRxiv"},{"journal-title":"Hybrid Memory Cube Consortium Std 2 1","year":"2015","key":"ref27"},{"journal-title":"DNA Sequencing Costs Data from the NHGRI Genome Sequencing Program (GSP)","year":"2018","key":"ref3"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.23919\/FPL.2017.8056838"},{"key":"ref29","first-page":"215","article-title":"Performance in practice of string hashing functions","author":"ramakrishna","year":"1997","journal-title":"Database Systems For Advanced Applications’ 97"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2011-12-8-125"},{"journal-title":"Childrens Hospital of Philadelphia and Edico Genome achieve fastest-ever analysis of 1 000 genomes","year":"2018","key":"ref8"},{"journal-title":"Inside the Microsoft FPGA-based configurable cloud","year":"2017","key":"ref7"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1038\/nature09796"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1146\/annurev-animal-090414-014900"},{"journal-title":"The human genome project completion Frequently asked questions","year":"2018","key":"ref1"},{"key":"ref20","article-title":"MSPKmerCounter: a fast and memory efficient approach for k-mer counting","author":"li","year":"2015","journal-title":"arXiv preprint arXiv 1505 03561"},{"journal-title":"“ Accelerating identification of frequent k-mers in DNA sequences with GPU","year":"2014","author":"suzuki","key":"ref22"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu132"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1080\/15427951.2004.10129096"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1109\/FCCM.2017.23"},{"journal-title":"Hybrid Memory Cube Consortium Std 1 1","year":"2014","key":"ref26"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1109\/HOTCHIPS.2011.7477494"}],"event":{"name":"2018 NASA\/ESA Conference on Adaptive Hardware and Systems (AHS)","start":{"date-parts":[[2018,8,6]]},"location":"Edinburgh","end":{"date-parts":[[2018,8,9]]}},"container-title":["2018 NASA\/ESA Conference on Adaptive Hardware and Systems (AHS)"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8515683\/8541365\/08541417.pdf?arnumber=8541417","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,1,27]],"date-time":"2022-01-27T15:28:49Z","timestamp":1643297329000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/8541417\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,8]]},"references-count":34,"URL":"https:\/\/doi.org\/10.1109\/ahs.2018.8541417","relation":{},"subject":[],"published":{"date-parts":[[2018,8]]}}}