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{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,2,1]],"date-time":"2024-02-01T18:47:14Z","timestamp":1706813234238},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"2","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2015,1,15]]},"abstract":"Abstract<\/jats:title>\n Summary : The wide variety of published approaches for the problem of regulatory network inference makes using multiple inference algorithms complex and time-consuming. Network Analysis and Inference Library (NAIL) is a set of software tools to simplify the range of computational activities involved in regulatory network inference. It uses a modular approach to connect different network inference algorithms to the same visualization and network-based analyses. NAIL is technology-independent and includes an interface layer to allow easy integration of components into other applications.<\/jats:p>\n Availability and implementation : NAIL is implemented in MATLAB, runs on Windows, Linux and OSX, and is available from SourceForge at https:\/\/sourceforge.net\/projects\/nailsystemsbiology\/ for all researchers to use.<\/jats:p>\n Contact : daniel.hurley@unimelb.edu.au<\/jats:p>\n Supplementary information : Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btu612","type":"journal-article","created":{"date-parts":[[2014,9,23]],"date-time":"2014-09-23T02:41:35Z","timestamp":1411440095000},"page":"277-278","source":"Crossref","is-referenced-by-count":12,"title":["NAIL, a software toolset for inferring, analyzing and visualizing regulatory networks"],"prefix":"10.1093","volume":"31","author":[{"given":"Daniel G.","family":"Hurley","sequence":"first","affiliation":[{"name":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada"},{"name":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada"},{"name":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada"},{"name":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada"}]},{"given":"Joseph","family":"Cursons","sequence":"additional","affiliation":[{"name":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada"},{"name":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada"}]},{"given":"Yi Kan","family":"Wang","sequence":"additional","affiliation":[{"name":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada"},{"name":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada"}]},{"given":"David M.","family":"Budden","sequence":"additional","affiliation":[{"name":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada"}]},{"given":"Cristin G.","family":"Print","sequence":"additional","affiliation":[{"name":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada"},{"name":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada"},{"name":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada"}]},{"given":"Edmund J.","family":"Crampin","sequence":"additional","affiliation":[{"name":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada"},{"name":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and 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