{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,4,11]],"date-time":"2025-04-11T17:06:22Z","timestamp":1744391182597},"reference-count":73,"publisher":"Oxford University Press (OUP)","issue":"24","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":1452,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,12,1]]},"abstract":"Abstract<\/jats:title>\n Motivation: A ubiquitous and fundamental step in high-throughput sequencing analysis is the alignment (mapping) of the generated reads to a reference sequence. To accomplish this task, numerous software tools have been proposed. Determining the mappers that are most suitable for a specific application is not trivial.<\/jats:p>\n Results: This survey focuses on classifying mappers through a wide number of characteristics. The goal is to allow practitioners to compare the mappers more easily and find those that are most suitable for their specific problem.<\/jats:p>\n Availability: A regularly updated compendium of mappers can be found at http:\/\/wwwdev.ebi.ac.uk\/fg\/hts_mappers\/.<\/jats:p>\n Contact: \u00a0nf@ebi.ac.uk<\/jats:p>\n Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/bts605","type":"journal-article","created":{"date-parts":[[2012,10,12]],"date-time":"2012-10-12T00:24:35Z","timestamp":1350001475000},"page":"3169-3177","source":"Crossref","is-referenced-by-count":219,"title":["Tools for mapping high-throughput sequencing data"],"prefix":"10.1093","volume":"28","author":[{"given":"Nuno A.","family":"Fonseca","sequence":"first","affiliation":[{"name":"EMBL Outstation, European Bioinformatics Institute (EBI), Hinxton, Cambridge CB10 ISD, UK"}]},{"given":"Johan","family":"Rung","sequence":"additional","affiliation":[{"name":"EMBL Outstation, European Bioinformatics Institute (EBI), Hinxton, Cambridge CB10 ISD, UK"}]},{"given":"Alvis","family":"Brazma","sequence":"additional","affiliation":[{"name":"EMBL Outstation, European Bioinformatics Institute (EBI), Hinxton, Cambridge CB10 ISD, UK"}]},{"given":"John C.","family":"Marioni","sequence":"additional","affiliation":[{"name":"EMBL Outstation, European Bioinformatics Institute (EBI), Hinxton, Cambridge CB10 ISD, UK"}]}],"member":"286","published-online":{"date-parts":[[2012,10,11]]},"reference":[{"key":"2023012513250239400_bts605-B1","doi-asserted-by":"crossref","first-page":"1061","DOI":"10.1038\/ng.437","article-title":"Personalized copy number and segmental duplication maps using next-generation sequencing","volume":"41","author":"Alkan","year":"2009","journal-title":"Nat. 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