{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,4,26]],"date-time":"2025-04-26T04:10:48Z","timestamp":1745640648398},"reference-count":11,"publisher":"Oxford University Press (OUP)","issue":"23","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":1466,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,12,1]]},"abstract":"Abstract<\/jats:title>\n Summary: InterMine is an open-source data warehouse system that facilitates the building of databases with complex data integration requirements and a need for a fast customizable query facility. Using InterMine, large biological databases can be created from a range of heterogeneous data sources, and the extensible data model allows for easy integration of new data types. The analysis tools include a flexible query builder, genomic region search and a library of \u2018widgets\u2019 performing various statistical analyses. The results can be exported in many commonly used formats. InterMine is a fully extensible framework where developers can add new tools and functionality. Additionally, there is a comprehensive set of web services, for which client libraries are provided in five commonly used programming languages.<\/jats:p>\n Availability: Freely available from http:\/\/www.intermine.org under the LGPL license.<\/jats:p>\n Contact: \u00a0g.micklem@gen.cam.ac.uk<\/jats:p>\n Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/bts577","type":"journal-article","created":{"date-parts":[[2012,10,1]],"date-time":"2012-10-01T00:38:58Z","timestamp":1349051938000},"page":"3163-3165","source":"Crossref","is-referenced-by-count":220,"title":["InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data"],"prefix":"10.1093","volume":"28","author":[{"given":"Richard N.","family":"Smith","sequence":"first","affiliation":[]},{"given":"Jelena","family":"Aleksic","sequence":"additional","affiliation":[]},{"given":"Daniela","family":"Butano","sequence":"additional","affiliation":[]},{"given":"Adrian","family":"Carr","sequence":"additional","affiliation":[]},{"given":"Sergio","family":"Contrino","sequence":"additional","affiliation":[]},{"given":"Fengyuan","family":"Hu","sequence":"additional","affiliation":[]},{"given":"Mike","family":"Lyne","sequence":"additional","affiliation":[]},{"given":"Rachel","family":"Lyne","sequence":"additional","affiliation":[]},{"given":"Alex","family":"Kalderimis","sequence":"additional","affiliation":[]},{"given":"Kim","family":"Rutherford","sequence":"additional","affiliation":[]},{"given":"Radek","family":"Stepan","sequence":"additional","affiliation":[]},{"given":"Julie","family":"Sullivan","sequence":"additional","affiliation":[]},{"given":"Matthew","family":"Wakeling","sequence":"additional","affiliation":[]},{"given":"Xavier","family":"Watkins","sequence":"additional","affiliation":[]},{"given":"Gos","family":"Micklem","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2012,9,27]]},"reference":[{"key":"2023062412010383900_bts577-B1","doi-asserted-by":"crossref","DOI":"10.1093\/database\/bar062","article-title":"Yeastmine\u2014an integrated data warehouse for saccharomyces cerevisiae data as a multipurpose tool-kit","volume":"2012","author":"Balakrishnan","year":"2012","journal-title":"Database"},{"key":"2023062412010383900_bts577-B2","doi-asserted-by":"crossref","first-page":"927","DOI":"10.1038\/459927a","article-title":"Unlocking the secrets of the genome","volume":"459","author":"Celniker","year":"2009","journal-title":"Nature"},{"key":"2023062412010383900_bts577-B9","doi-asserted-by":"crossref","first-page":"e17844","DOI":"10.1371\/journal.pone.0017844","article-title":"TargetMine, an integrated data warehouse for candidate gene prioritisation and target discovery","volume":"6","author":"Chen","year":"2011","journal-title":"PLoS One"},{"key":"2023062412010383900_bts577-B3","doi-asserted-by":"crossref","first-page":"D1082","DOI":"10.1093\/nar\/gkr921","article-title":"modMine: flexible access to modENCODE data","volume":"40","author":"Contrino","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"2023062412010383900_bts577-B4","doi-asserted-by":"crossref","first-page":"R44","DOI":"10.1186\/gb-2005-6-5-r44","article-title":"The Sequence Ontology: a tool for the unification of genome annotations","volume":"6","author":"Eilbeck","year":"2005","journal-title":"Genome Biol."},{"key":"2023062412010383900_bts577-B5","doi-asserted-by":"crossref","first-page":"R86","DOI":"10.1186\/gb-2010-11-8-r86","article-title":"Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences","volume":"11","author":"Goecks","year":"2010","journal-title":"Genome Biol."},{"key":"2023062412010383900_bts577-B6","doi-asserted-by":"crossref","first-page":"R129","DOI":"10.1186\/gb-2007-8-7-r129","article-title":"FlyMine: an integrated database for Drosophila and Anopheles genomics","volume":"8","author":"Lyne","year":"2007","journal-title":"Genome Biol."},{"key":"2023062412010383900_bts577-B10","doi-asserted-by":"crossref","first-page":"D443","DOI":"10.1093\/nar\/gkp910","article-title":"FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database","volume":"38","author":"Pfreundt","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"2023062412010383900_bts577-B7","doi-asserted-by":"crossref","first-page":"124","DOI":"10.1186\/1479-7364-5-2-124","article-title":"Rgd: a comparative genomics platform","volume":"5","author":"Shimoyama","year":"2011","journal-title":"Hum. Genomics"},{"key":"2023062412010383900_bts577-B11","doi-asserted-by":"crossref","first-page":"D1160","DOI":"10.1093\/nar\/gkr1101","article-title":"MitoMiner: a data warehouse for mitochondrial proteomics data","volume":"40","author":"Smith","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"2023062412010383900_bts577-B8","first-page":"34","article-title":"Systems biology warehousing: challenges and strategies toward effective data integration","volume-title":"DBKDA 2011, The Third International Conference on Advances in Databases, Knowledge, and Data Applications","author":"Triplet","year":"2011"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/28\/23\/3163\/50694906\/bioinformatics_28_23_3163.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/28\/23\/3163\/50694906\/bioinformatics_28_23_3163.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,6,24]],"date-time":"2023-06-24T12:01:37Z","timestamp":1687608097000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/28\/23\/3163\/193595"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,9,27]]},"references-count":11,"journal-issue":{"issue":"23","published-print":{"date-parts":[[2012,12,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/bts577","relation":{},"ISSN":["1367-4803","1367-4811"],"issn-type":[{"value":"1367-4803","type":"print"},{"value":"1367-4811","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2012,12]]},"published":{"date-parts":[[2012,9,27]]}}}