{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,1,26]],"date-time":"2023-01-26T05:20:27Z","timestamp":1674710427588},"reference-count":4,"publisher":"Oxford University Press (OUP)","issue":"21","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,11,1]]},"abstract":"Abstract<\/jats:title>\n Summary: Synthetic Biology is advanced by many users and relies on the assembly of genetic elements to devices, systems and finally genomes. SynBioWave is a software suite that enables multiple distributed users to analyze and construct genetic parts in real-time collaboration. It builds on Google Wave and provides an extensible robot\u2013robot\u2013user communication framework, a menu driven user interface, biological data handling including DAS and an internal database communication. We demonstrate its use by implementing robots for gene\u2013data retrieval, manipulation and display. The initial development of SynBioWave demonstrates the power of the underlying Google Wave protocol for Synthetic Biology and lays the foundation for continuous and user-friendly extensions. Specialized wave-robots with a manageable set of capabilities will divide and conquer the complex task of creating a genome in silico.<\/jats:p>\n Availability: The robot is available at SynBioWave@appspot.com, the source code at http:\/\/synbiowave.sourceforge.net<\/jats:p>\n Contact: \u00a0kristian@biologie.uni-freiburg.de<\/jats:p>\n Supplementary information: \u00a0Supplementary data are available at Bioinformatics online and at http:\/\/www.synbiowave.org.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq518","type":"journal-article","created":{"date-parts":[[2010,9,15]],"date-time":"2010-09-15T00:38:27Z","timestamp":1284511107000},"page":"2782-2783","source":"Crossref","is-referenced-by-count":3,"title":["SynBioWave\u2014a real-time communication platform for molecular and synthetic biology"],"prefix":"10.1093","volume":"26","author":[{"given":"Paul R.","family":"Staab","sequence":"first","affiliation":[{"name":"1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam"}]},{"given":"J\u00f6rg","family":"Walossek","sequence":"additional","affiliation":[{"name":"1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam"}]},{"given":"David","family":"Nellessen","sequence":"additional","affiliation":[{"name":"1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam"}]},{"given":"Raik","family":"Gr\u00fcnberg","sequence":"additional","affiliation":[{"name":"1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam"}]},{"given":"Katja M.","family":"Arndt","sequence":"additional","affiliation":[{"name":"1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam"},{"name":"1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam"},{"name":"1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam"},{"name":"1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam"}]},{"given":"Kristian M.","family":"M\u00fcller","sequence":"additional","affiliation":[{"name":"1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam"},{"name":"1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam"}]}],"member":"286","published-online":{"date-parts":[[2010,9,13]]},"reference":[{"key":"2023012507535384800_B1","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1186\/1471-2105-2-7","article-title":"The distributed annotation system","volume":"2","author":"Dowell","year":"2001","journal-title":"BMC 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