乐胖代购免代理版

{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,1,28]],"date-time":"2023-01-28T12:32:18Z","timestamp":1674909138988},"reference-count":27,"publisher":"Oxford University Press (OUP)","issue":"18","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2220,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,9,15]]},"abstract":"Abstract<\/jats:title>\n Motivation: The world-wide community of life scientists has access to a large number of public bioinformatics databases and tools, which are developed and deployed using diverse technologies and designs. More and more of the resources offer programmatic web-service interface. However, efficient use of the resources is hampered by the lack of widely used, standard data-exchange formats for the basic, everyday bioinformatics data types.<\/jats:p>\n Results: BioXSD has been developed as a candidate for standard, canonical exchange format for basic bioinformatics data. BioXSD is represented by a dedicated XML Schema and defines syntax for biological sequences, sequence annotations, alignments and references to resources. We have adapted a set of web services to use BioXSD as the input and output format, and implemented a test-case workflow. This demonstrates that the approach is feasible and provides smooth interoperability. Semantics for BioXSD is provided by annotation with the EDAM ontology. We discuss in a separate section how BioXSD relates to other initiatives and approaches, including existing standards and the Semantic Web.<\/jats:p>\n Availability: The BioXSD 1.0 XML Schema is freely available at http:\/\/www.bioxsd.org\/BioXSD-1.0.xsd under the Creative Commons BY-ND 3.0 license. The http:\/\/bioxsd.org web page offers documentation, examples of data in BioXSD format, example workflows with source codes in common programming languages, an updated list of compatible web services and tools and a repository of feature requests from the community.<\/jats:p>\n Contact: \u00a0matus.kalas@bccs.uib.no; developers@bioxsd.org; support@bioxsd.org<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq391","type":"journal-article","created":{"date-parts":[[2010,9,7]],"date-time":"2010-09-07T17:41:46Z","timestamp":1283881306000},"page":"i540-i546","source":"Crossref","is-referenced-by-count":18,"title":["BioXSD: the common data-exchange format for everyday bioinformatics web services"],"prefix":"10.1093","volume":"26","author":[{"given":"Mat\u00fa\u0161","family":"Kala\u0161","sequence":"first","affiliation":[{"name":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"},{"name":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"}]},{"given":"P\u00e5l","family":"Puntervoll","sequence":"additional","affiliation":[{"name":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"}]},{"given":"Alexandre","family":"Joseph","sequence":"additional","affiliation":[{"name":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"}]},{"given":"Edita","family":"Barta\u0161evi\u010di\u016bt\u0117","sequence":"additional","affiliation":[{"name":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"}]},{"given":"Armin","family":"T\u00f6pfer","sequence":"additional","affiliation":[{"name":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"},{"name":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"}]},{"given":"Prabakar","family":"Venkataraman","sequence":"additional","affiliation":[{"name":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"}]},{"given":"Steve","family":"Pettifer","sequence":"additional","affiliation":[{"name":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"}]},{"given":"Jan Christian","family":"Bryne","sequence":"additional","affiliation":[{"name":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"},{"name":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"}]},{"given":"Jon","family":"Ison","sequence":"additional","affiliation":[{"name":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"}]},{"given":"Christophe","family":"Blanchet","sequence":"additional","affiliation":[{"name":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"}]},{"given":"Kristoffer","family":"Rapacki","sequence":"additional","affiliation":[{"name":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"}]},{"given":"Inge","family":"Jonassen","sequence":"additional","affiliation":[{"name":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"},{"name":"1 Computational Biology Unit, Bergen Center for Computational Science, Uni Research, 5008 Bergen, Norway, 2Department of Informatics, University of Bergen, 5008 Bergen, Norway, 3Universit\u00e9 Lyon 1; CNRS, UMR 5086; IBCP, Institut de Biologie et Chimie des Prot\u00e9ines, 69367 Lyon Cedex 07, France, 4Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark, 5Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany, 6School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK and 7European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK"}]}],"member":"286","published-online":{"date-parts":[[2010,9,4]]},"reference":[{"key":"2023012508282163000_B1","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. 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