{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,8,25]],"date-time":"2024-08-25T13:27:13Z","timestamp":1724592433448},"reference-count":27,"publisher":"Oxford University Press (OUP)","issue":"17","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009,9,1]]},"abstract":"Abstract<\/jats:title>\n Motivation: A rapidly increasing number of microbial genomes are sequenced by organizations worldwide and are eventually included into various public genome data resources. The quality of the annotations depends largely on the original dataset providers, with erroneous or incomplete annotations often carried over into the public resources and difficult to correct.<\/jats:p>\n Results: We have developed an Expert Review (ER) version of the Integrated Microbial Genomes (IMG) system, with the goal of supporting systematic and efficient revision of microbial genome annotations. IMG ER provides tools for the review and curation of annotations of both new and publicly available microbial genomes within IMG's rich integrated genome framework. New genome datasets are included into IMG ER prior to their public release either with their native annotations or with annotations generated by IMG ER's annotation pipeline. IMG ER tools allow addressing annotation problems detected with IMG's comparative analysis tools, such as genes missed by gene prediction pipelines or genes without an associated function. Over the past year, IMG ER was used for improving the annotations of about 150 microbial genomes.<\/jats:p>\n Contact: \u00a0vmmarkowitz@lbl.gov<\/jats:p>\n Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btp393","type":"journal-article","created":{"date-parts":[[2009,6,28]],"date-time":"2009-06-28T00:13:44Z","timestamp":1246148024000},"page":"2271-2278","source":"Crossref","is-referenced-by-count":764,"title":["IMG ER: a system for microbial genome annotation expert review and curation"],"prefix":"10.1093","volume":"25","author":[{"given":"Victor M.","family":"Markowitz","sequence":"first","affiliation":[{"name":"1 Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 and 2 Genome Biology Program, DOE Joint Genome Institute, 2800 Mitchell Dr., Walnut Creek, CA 94598, USA"}]},{"given":"Konstantinos","family":"Mavromatis","sequence":"additional","affiliation":[{"name":"1 Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 and 2 Genome Biology Program, DOE Joint Genome Institute, 2800 Mitchell Dr., Walnut Creek, CA 94598, USA"}]},{"given":"Natalia N.","family":"Ivanova","sequence":"additional","affiliation":[{"name":"1 Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 and 2 Genome Biology Program, DOE Joint Genome Institute, 2800 Mitchell Dr., Walnut Creek, CA 94598, USA"}]},{"given":"I-Min A.","family":"Chen","sequence":"additional","affiliation":[{"name":"1 Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 and 2 Genome Biology Program, DOE Joint Genome Institute, 2800 Mitchell Dr., Walnut Creek, CA 94598, USA"}]},{"given":"Ken","family":"Chu","sequence":"additional","affiliation":[{"name":"1 Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 and 2 Genome Biology Program, DOE Joint Genome Institute, 2800 Mitchell Dr., Walnut Creek, CA 94598, USA"}]},{"given":"Nikos C.","family":"Kyrpides","sequence":"additional","affiliation":[{"name":"1 Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 and 2 Genome Biology Program, DOE Joint Genome Institute, 2800 Mitchell Dr., Walnut Creek, CA 94598, USA"}]}],"member":"286","published-online":{"date-parts":[[2009,6,27]]},"reference":[{"key":"2023013112105479100_B1","doi-asserted-by":"crossref","DOI":"10.1038\/ismej.2009.45","article-title":"The genome sequence of the psychrophilic archaeon Methanococcoides burtonii: the role of genome evolution in cold adaptation","author":"Alen","year":"2009","journal-title":"ISME 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