{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,4,19]],"date-time":"2025-04-19T10:09:31Z","timestamp":1745057371343},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"7","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2007,4,1]]},"abstract":"Abstract<\/jats:title>Summary: NetMatch is a Cytoscape plugin which allows searching biological networks for subcomponents matching a given query. Queries may be approximate in the sense that certain parts of the subgraph-query may be left unspecified. To make the query creation process easy, a drawing tool is provided. Cytoscape is a bioinformatics software platform for the visualization and analysis of biological networks.<\/jats:p>Availability: The full package, a tutorial and associated examples are available at the following web sites: http:\/\/alpha.dmi.unict.it\/~ctnyu\/netmatch.html, http:\/\/baderlab.org\/Software\/NetMatch<\/jats:p>Contact: \u00a0ferro@dmi.unict.it<\/jats:p>","DOI":"10.1093\/bioinformatics\/btm032","type":"journal-article","created":{"date-parts":[[2007,2,4]],"date-time":"2007-02-04T12:39:26Z","timestamp":1170592766000},"page":"910-912","source":"Crossref","is-referenced-by-count":66,"title":["NetMatch: a Cytoscape plugin for searching biological networks"],"prefix":"10.1093","volume":"23","author":[{"given":"A.","family":"Ferro","sequence":"first","affiliation":[{"name":"1 Dipartimento di Matematica e Informatica, Universit\u00e0 di Catania, Viale A. Doria 6, I-95125 Catania, Italy, 2Banting and Best Department of Medical Research and Department of Medical Genetics and Microbiology, University of Toronto, 160 College St, Toronto, Ontario, Canada M5S 3E1 and 3Courant Institute of Mathematical Sciences, New York University, 251 Mercer Street New York, NY 10012, USA"}]},{"given":"R.","family":"Giugno","sequence":"additional","affiliation":[{"name":"1 Dipartimento di Matematica e Informatica, Universit\u00e0 di Catania, Viale A. Doria 6, I-95125 Catania, Italy, 2Banting and Best Department of Medical Research and Department of Medical Genetics and Microbiology, University of Toronto, 160 College St, Toronto, Ontario, Canada M5S 3E1 and 3Courant Institute of Mathematical Sciences, New York University, 251 Mercer Street New York, NY 10012, USA"}]},{"given":"G.","family":"Pigola","sequence":"additional","affiliation":[{"name":"1 Dipartimento di Matematica e Informatica, Universit\u00e0 di Catania, Viale A. Doria 6, I-95125 Catania, Italy, 2Banting and Best Department of Medical Research and Department of Medical Genetics and Microbiology, University of Toronto, 160 College St, Toronto, Ontario, Canada M5S 3E1 and 3Courant Institute of Mathematical Sciences, New York University, 251 Mercer Street New York, NY 10012, USA"}]},{"given":"A.","family":"Pulvirenti","sequence":"additional","affiliation":[{"name":"1 Dipartimento di Matematica e Informatica, Universit\u00e0 di Catania, Viale A. Doria 6, I-95125 Catania, Italy, 2Banting and Best Department of Medical Research and Department of Medical Genetics and Microbiology, University of Toronto, 160 College St, Toronto, Ontario, Canada M5S 3E1 and 3Courant Institute of Mathematical Sciences, New York University, 251 Mercer Street New York, NY 10012, USA"}]},{"given":"D.","family":"Skripin","sequence":"additional","affiliation":[{"name":"1 Dipartimento di Matematica e Informatica, Universit\u00e0 di Catania, Viale A. Doria 6, I-95125 Catania, Italy, 2Banting and Best Department of Medical Research and Department of Medical Genetics and Microbiology, University of Toronto, 160 College St, Toronto, Ontario, Canada M5S 3E1 and 3Courant Institute of Mathematical Sciences, New York University, 251 Mercer Street New York, NY 10012, USA"}]},{"given":"G. D.","family":"Bader","sequence":"additional","affiliation":[{"name":"1 Dipartimento di Matematica e Informatica, Universit\u00e0 di Catania, Viale A. Doria 6, I-95125 Catania, Italy, 2Banting and Best Department of Medical Research and Department of Medical Genetics and Microbiology, University of Toronto, 160 College St, Toronto, Ontario, Canada M5S 3E1 and 3Courant Institute of Mathematical Sciences, New York University, 251 Mercer Street New York, NY 10012, USA"}]},{"given":"D.","family":"Shasha","sequence":"additional","affiliation":[{"name":"1 Dipartimento di Matematica e Informatica, Universit\u00e0 di Catania, Viale A. Doria 6, I-95125 Catania, Italy, 2Banting and Best Department of Medical Research and Department of Medical Genetics and Microbiology, University of Toronto, 160 College St, Toronto, Ontario, Canada M5S 3E1 and 3Courant Institute of Mathematical Sciences, New York University, 251 Mercer Street New York, NY 10012, USA"}]}],"member":"286","published-online":{"date-parts":[[2007,2,3]]},"reference":[{"key":"2023041108150751500_","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1038\/nrg1272","article-title":"Network biology: understanding the cells functional organization","author":"Barab\u00e1si","year":"2004","journal-title":"Nature, Genetics Volume"},{"key":"2023041108150751500_","doi-asserted-by":"crossref","first-page":"1367","DOI":"10.1109\/TPAMI.2004.75","article-title":"A (sub)graph isomorphism algorithm for matching large graphs","volume":"26","author":"Cordella","year":"2004","journal-title":"IEEE Trans. on PAMI"},{"key":"2023041108150751500_","doi-asserted-by":"crossref","first-page":"824","DOI":"10.1126\/science.298.5594.824","article-title":"Network motifs: simple building blocks of complex networks","volume":"298","author":"Milo","year":"2002","journal-title":"Science"},{"key":"2023041108150751500_","doi-asserted-by":"crossref","first-page":"3572","DOI":"10.1093\/bioinformatics\/bti556","article-title":"Mavisto: a tool for the exploration of network motifs","volume":"21","author":"Schreiber","year":"2003","journal-title":"Bioinformatics"},{"key":"2023041108150751500_","doi-asserted-by":"crossref","first-page":"2498","DOI":"10.1101\/gr.1239303","article-title":"Cytoscape: a software environment for integrated models of biomolecular interaction networks","volume":"13","author":"Shannon","year":"2003","journal-title":"Genome Research"},{"key":"2023041108150751500_","doi-asserted-by":"crossref","first-page":"1152","DOI":"10.1093\/bioinformatics\/btl038","article-title":"Fanmod: a tool for fast network motif detection","volume":"22","author":"Wernicke","year":"2006","journal-title":"Bioinformatics"},{"key":"2023041108150751500_","doi-asserted-by":"crossref","first-page":"2968","DOI":"10.1093\/bioinformatics\/btl488","article-title":"The tyna platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks","volume":"22","author":"Yip","year":"2006","journal-title":"Bioinformatics"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/23\/7\/910\/49822503\/bioinformatics_23_7_910.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/23\/7\/910\/49822503\/bioinformatics_23_7_910.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,2,10]],"date-time":"2024-02-10T18:11:46Z","timestamp":1707588706000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/23\/7\/910\/217828"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007,2,3]]},"references-count":7,"journal-issue":{"issue":"7","published-print":{"date-parts":[[2007,4,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btm032","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2007,4,1]]},"published":{"date-parts":[[2007,2,3]]}}}