{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,8,2]],"date-time":"2024-08-02T00:16:42Z","timestamp":1722557802466},"reference-count":8,"publisher":"Oxford University Press (OUP)","issue":"21","license":[{"start":{"date-parts":[[2021,9,1]],"date-time":"2021-09-01T00:00:00Z","timestamp":1630454400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,11,5]]},"abstract":"Abstract<\/jats:title>\n \n Summary<\/jats:title>\n The Flexible Taxonomy Database framework provides a method for modification and merging official and custom taxonomic databases to create improved databases. Using such databases will increase accuracy and precision of existing methods to classify sequence reads.<\/jats:p>\n <\/jats:sec>\n \n Availability and implementation<\/jats:title>\n Source code is freely available at https:\/\/github.com\/FOI-Bioinformatics\/flextaxd and installable through Bioconda.<\/jats:p>\n <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btab621","type":"journal-article","created":{"date-parts":[[2021,9,1]],"date-time":"2021-09-01T17:39:03Z","timestamp":1630517943000},"page":"3932-3933","source":"Crossref","is-referenced-by-count":3,"title":["FlexTaxD: flexible modification of taxonomy databases for improved sequence classification"],"prefix":"10.1093","volume":"37","author":[{"ORCID":"http:\/\/orcid.org\/0000-0002-6269-0217","authenticated-orcid":false,"given":"David","family":"Sundell","sequence":"first","affiliation":[{"name":"CBRN Security and Defence, FOI, Swedish Defence Research Agency , Ume\u00e5, Sweden"}]},{"given":"Caroline","family":"\u00d6hrman","sequence":"additional","affiliation":[{"name":"CBRN Security and Defence, FOI, Swedish Defence Research Agency , Ume\u00e5, Sweden"}]},{"given":"Daniel","family":"Svensson","sequence":"additional","affiliation":[{"name":"CBRN Security and Defence, FOI, Swedish Defence Research Agency , Ume\u00e5, Sweden"},{"name":"Department of Ecology and Environmental Science, Ume\u00e5 University , Ume\u00e5, Sweden"}]},{"given":"Edvin","family":"Karlsson","sequence":"additional","affiliation":[{"name":"CBRN Security and Defence, FOI, Swedish Defence Research Agency , Ume\u00e5, Sweden"},{"name":"Department of Ecology and Environmental Science, Ume\u00e5 University , Ume\u00e5, Sweden"}]},{"given":"Bj\u00f6rn","family":"Brindefalk","sequence":"additional","affiliation":[{"name":"CBRN Security and Defence, FOI, Swedish Defence Research Agency , Ume\u00e5, Sweden"}]},{"given":"Kerstin","family":"Myrtenn\u00e4s","sequence":"additional","affiliation":[{"name":"CBRN Security and Defence, FOI, Swedish Defence Research Agency , Ume\u00e5, Sweden"}]},{"given":"Jon","family":"Ahlinder","sequence":"additional","affiliation":[{"name":"CBRN Security and Defence, FOI, Swedish Defence Research Agency , Ume\u00e5, Sweden"}]},{"given":"Markus H","family":"Antwerpen","sequence":"additional","affiliation":[{"name":"Department of Microbial Genomics and Bioinformatics, Bundeswehr Institute of Microbiology , Munich, Germany"}]},{"given":"Mathias C","family":"Walter","sequence":"additional","affiliation":[{"name":"Department of Microbial Genomics and Bioinformatics, Bundeswehr Institute of Microbiology , Munich, Germany"}]},{"given":"Mats","family":"Forsman","sequence":"additional","affiliation":[{"name":"CBRN Security and Defence, FOI, Swedish Defence Research Agency , Ume\u00e5, Sweden"}]},{"given":"Per","family":"Stenberg","sequence":"additional","affiliation":[{"name":"CBRN Security and Defence, FOI, Swedish Defence Research Agency , Ume\u00e5, Sweden"},{"name":"Department of Ecology and Environmental Science, Ume\u00e5 University , Ume\u00e5, Sweden"}]},{"given":"Andreas","family":"Sj\u00f6din","sequence":"additional","affiliation":[{"name":"CBRN Security and Defence, FOI, Swedish Defence Research Agency , Ume\u00e5, Sweden"}]}],"member":"286","published-online":{"date-parts":[[2021,9,1]]},"reference":[{"key":"2023051608164742000_btab621-B1","doi-asserted-by":"crossref","first-page":"1331","DOI":"10.1099\/jgv.0.001110","article-title":"Evaluation of the genomic diversity of viruses infecting bacteria, archaea and eukaryotes using a common bioinformatic platform: steps towards a unified taxonomy","volume":"99","author":"Aiewsakun","year":"2018","journal-title":"J. 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