{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,15]],"date-time":"2024-09-15T16:55:39Z","timestamp":1726419339337},"reference-count":21,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2012,11,1]],"date-time":"2012-11-01T00:00:00Z","timestamp":1351728000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Ecological Informatics"],"published-print":{"date-parts":[[2012,11]]},"DOI":"10.1016\/j.ecoinf.2012.07.003","type":"journal-article","created":{"date-parts":[[2012,7,21]],"date-time":"2012-07-21T22:01:10Z","timestamp":1342908070000},"page":"10-15","source":"Crossref","is-referenced-by-count":6,"special_numbering":"C","title":["Poseidon: An information retrieval and extraction system for metagenomic marine science"],"prefix":"10.1016","volume":"12","author":[{"given":"Marcin","family":"Radom","sequence":"first","affiliation":[]},{"given":"Agnieszka","family":"Rybarczyk","sequence":"additional","affiliation":[]},{"given":"Renzo","family":"Kottmann","sequence":"additional","affiliation":[]},{"given":"Piotr","family":"Formanowicz","sequence":"additional","affiliation":[]},{"given":"Marta","family":"Szachniuk","sequence":"additional","affiliation":[]},{"given":"Frank Oliver","family":"Gl\u00f6ckner","sequence":"additional","affiliation":[]},{"given":"Dietrich","family":"Rebholz-Schuhmann","sequence":"additional","affiliation":[]},{"given":"Jacek","family":"B\u0142a\u017cewicz","sequence":"additional","affiliation":[]}],"member":"78","reference":[{"key":"10.1016\/j.ecoinf.2012.07.003_bb0005","doi-asserted-by":"crossref","first-page":"12","DOI":"10.1016\/S0014-5793(00)01661-6","article-title":"Automated extraction of information in molecular biology","volume":"476","author":"Andrade","year":"2000","journal-title":"FEBS Letters"},{"key":"10.1016\/j.ecoinf.2012.07.003_bb0010","doi-asserted-by":"crossref","first-page":"459","DOI":"10.1186\/1471-2105-9-459","article-title":"MetaMine \u2014 a tool to detect and analyse environmentally relevant gene patterns","volume":"9","author":"Bohnebeck","year":"2008","journal-title":"BMC Bioinformatics"},{"key":"10.1016\/j.ecoinf.2012.07.003_bb0020","doi-asserted-by":"crossref","first-page":"57","DOI":"10.1093\/bib\/6.1.57","article-title":"A survey of current work in biomedical text mining","volume":"6","author":"Cohen","year":"2005","journal-title":"Briefings in Bioinformatics"},{"key":"10.1016\/j.ecoinf.2012.07.003_bb0025","doi-asserted-by":"crossref","first-page":"541","DOI":"10.1038\/nbt1360","article-title":"The minimum information about a genome sequence (MIGS) specification","volume":"26","author":"Field","year":"2008","journal-title":"Nature Biotechnology"},{"key":"10.1016\/j.ecoinf.2012.07.003_bb0030","doi-asserted-by":"crossref","first-page":"523","DOI":"10.1111\/j.1751-7915.2010.00169.x","article-title":"Marine microbial genomics in Europe: current status and perspectives","volume":"3","author":"Gl\u00f6ckner","year":"2010","journal-title":"Microbial Biotechnology"},{"key":"10.1016\/j.ecoinf.2012.07.003_bb0035","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1038\/nrg1768","article-title":"Literature mining for the biologist: from information retrieval to biological discovery","volume":"7","author":"Jensen","year":"2006","journal-title":"Nature Reviews Genetics"},{"key":"10.1016\/j.ecoinf.2012.07.003_bb0040","doi-asserted-by":"crossref","first-page":"115","DOI":"10.1089\/omi.2008.0A10","article-title":"A standard MIGS\/MIMS compliant XML schema: toward the development of the genomic contextual data markup language (GCDML)","volume":"12","author":"Kottmann","year":"2008","journal-title":"Omics"},{"issue":"1","key":"10.1016\/j.ecoinf.2012.07.003_bb0045","doi-asserted-by":"crossref","first-page":"D391","DOI":"10.1093\/nar\/gkp918","article-title":"Megx.net: integrated database resource for marine ecological genomics","volume":"38","author":"Kottmann","year":"2010","journal-title":"Nucleic Acids Research"},{"key":"10.1016\/j.ecoinf.2012.07.003_bb0050","doi-asserted-by":"crossref","first-page":"D390","DOI":"10.1093\/nar\/gkj070","article-title":"Megx.net \u2014 database resources for marine ecological genomics","volume":"34","author":"Lombardot","year":"2006","journal-title":"Nucleic Acids Research"},{"key":"10.1016\/j.ecoinf.2012.07.003_bb0055","doi-asserted-by":"crossref","first-page":"406","DOI":"10.1186\/1471-2105-8-406","article-title":"MetaLook: a 3D visualisation software for marine ecological genomics","volume":"8","author":"Lombardot","year":"2007","journal-title":"BMC Bioinformatics"},{"author":"MetaFunctions factsheet","key":"10.1016\/j.ecoinf.2012.07.003_bb0060"},{"author":"Moore Foundation","key":"10.1016\/j.ecoinf.2012.07.003_bb0065"},{"key":"10.1016\/j.ecoinf.2012.07.003_bb0070","doi-asserted-by":"crossref","first-page":"e309","DOI":"10.1371\/journal.pbio.0020309","article-title":"Textpresso: an ontology-based information retrieval and extraction system for biological literature","volume":"2","author":"Muller","year":"2004","journal-title":"PLoS Biology"},{"key":"10.1016\/j.ecoinf.2012.07.003_bb0075","first-page":"107","article-title":"Cerberus: a new information retrieval tool for marine metagenomics","volume":"35","author":"Radom","year":"2010","journal-title":"Foundations of Computing and Decision Sciences"},{"key":"10.1016\/j.ecoinf.2012.07.003_bb0080","doi-asserted-by":"crossref","first-page":"693","DOI":"10.1038\/nrmicro1935","article-title":"Molecular eco-systems biology: towards an understanding of community function","volume":"6","author":"Raes","year":"2008","journal-title":"Nature Reviews Microbiology"},{"key":"10.1016\/j.ecoinf.2012.07.003_bb0085","doi-asserted-by":"crossref","first-page":"e65","DOI":"10.1371\/journal.pbio.0030065","article-title":"Facts from text \u2014 is text mining ready to deliver","volume":"3","author":"Rebholz-Schuhmann","year":"2005","journal-title":"PLoS Biology"},{"issue":"2","key":"10.1016\/j.ecoinf.2012.07.003_bb0090","doi-asserted-by":"crossref","first-page":"296","DOI":"10.1093\/bioinformatics\/btm557","article-title":"Text processing through web services: calling Whatizit","volume":"24","author":"Rebholz-Schuhmann","year":"2008","journal-title":"Bioinformatics"},{"key":"10.1016\/j.ecoinf.2012.07.003_bb0095","doi-asserted-by":"crossref","first-page":"1210","DOI":"10.2144\/99276bc03","article-title":"MedMiner: an internet text-mining tool for biomedical information, with application to gene expression profiling","volume":"27","author":"Tanabe","year":"1999","journal-title":"Biotechniques"},{"key":"10.1016\/j.ecoinf.2012.07.003_bb0100","doi-asserted-by":"crossref","first-page":"805","DOI":"10.1038\/nrg1709","article-title":"Metagenomics: DNA sequencing of environmental samples","volume":"6","author":"Tringe","year":"2005","journal-title":"Nature Reviews Genetics"},{"key":"10.1016\/j.ecoinf.2012.07.003_bb0105","doi-asserted-by":"crossref","first-page":"66","DOI":"10.1126\/science.1093857","article-title":"Environmental genome shotgun sequencing of the Sargasso Sea","volume":"304","author":"Venter","year":"2004","journal-title":"Science"},{"key":"10.1016\/j.ecoinf.2012.07.003_bb0110","first-page":"1","article-title":"The Sorcerer II global ocean sampling expedition: expanding the universe of protein families","volume":"6","author":"Yooseph","year":"2007","journal-title":"PLoS Biology"}],"container-title":["Ecological Informatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1574954112000696?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1574954112000696?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2019,7,1]],"date-time":"2019-07-01T08:39:04Z","timestamp":1561970344000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1574954112000696"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,11]]},"references-count":21,"alternative-id":["S1574954112000696"],"URL":"https:\/\/doi.org\/10.1016\/j.ecoinf.2012.07.003","relation":{},"ISSN":["1574-9541"],"issn-type":[{"type":"print","value":"1574-9541"}],"subject":[],"published":{"date-parts":[[2012,11]]}}}