{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,9,13]],"date-time":"2023-09-13T20:32:42Z","timestamp":1694637162847},"reference-count":53,"publisher":"Elsevier BV","issue":"1","license":[{"start":{"date-parts":[[2010,1,1]],"date-time":"2010-01-01T00:00:00Z","timestamp":1262304000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Biosystems"],"published-print":{"date-parts":[[2010,1]]},"DOI":"10.1016\/j.biosystems.2009.07.009","type":"journal-article","created":{"date-parts":[[2009,8,27]],"date-time":"2009-08-27T10:37:43Z","timestamp":1251369463000},"page":"1-5","source":"Crossref","is-referenced-by-count":9,"title":["A rationale for the symmetries by base substitutions of degeneracy in the genetic code"],"prefix":"10.1016","volume":"99","author":[{"given":"Jean-Luc","family":"Jestin","sequence":"first","affiliation":[]}],"member":"78","reference":[{"key":"10.1016\/j.biosystems.2009.07.009_bib1","doi-asserted-by":"crossref","first-page":"13878","DOI":"10.1016\/S0021-9258(18)77430-9","article-title":"The fidelity of DNA synthesis catalyzed by derivatives of Escherichia coli DNA polymerase I","volume":"265","author":"Bebenek","year":"1990","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.biosystems.2009.07.009_bib2","doi-asserted-by":"crossref","first-page":"7345","DOI":"10.1074\/jbc.272.11.7345","article-title":"Base miscoding and strand misalignment errors by mutator Klenow polymerases with amino acid substitutions at tyrosine 766 in the O helix of the fingers subdomain","volume":"272","author":"Bell","year":"1997","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.biosystems.2009.07.009_bib3","doi-asserted-by":"crossref","first-page":"15327","DOI":"10.1074\/jbc.270.25.15327","article-title":"Purification and properties of wild-type and exonuclease-deficient DNA polymerase II from Escherichia coli","volume":"270","author":"Cai","year":"1995","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.biosystems.2009.07.009_bib4","doi-asserted-by":"crossref","first-page":"177","DOI":"10.1016\/S0022-5193(03)00025-0","article-title":"Block structure and stability of the genetic code","volume":"222","author":"Chechetkin","year":"2003","journal-title":"J. Theor. Biol."},{"key":"10.1016\/j.biosystems.2009.07.009_bib5","series-title":"Sphere Packing, Lattices and Groups","author":"Conway","year":"1988"},{"key":"10.1016\/j.biosystems.2009.07.009_bib6","doi-asserted-by":"crossref","first-page":"327","DOI":"10.1007\/BF01732219","article-title":"Symmetries of genetic code doublets","volume":"5","author":"Danckwerts","year":"1975","journal-title":"J. Mol. Evol."},{"key":"10.1016\/j.biosystems.2009.07.009_bib7","doi-asserted-by":"crossref","first-page":"479","DOI":"10.1023\/A:1025772828039","article-title":"The early phases of genetic code origin: conjectures on the evolution of coded catalysis","volume":"33","author":"Di Giulio","year":"2003","journal-title":"Origins Life Evol. Biosph."},{"key":"10.1016\/j.biosystems.2009.07.009_bib8","doi-asserted-by":"crossref","first-page":"175","DOI":"10.1016\/j.biosystems.2004.11.005","article-title":"The origin of the genetic code: theories and their relationships, a review","volume":"80","author":"Di Giulio","year":"2005","journal-title":"Biosystems"},{"key":"10.1016\/j.biosystems.2009.07.009_bib9","doi-asserted-by":"crossref","first-page":"501","DOI":"10.1126\/science.1057718","article-title":"Enlarging the amino acid set of E. coli by infiltration of the valine coding pathway","volume":"292","author":"D\u00f6ring","year":"2001","journal-title":"Science"},{"key":"10.1016\/j.biosystems.2009.07.009_bib10","doi-asserted-by":"crossref","first-page":"465","DOI":"10.1007\/BF00623322","article-title":"Selforganisation of matter and the evolution of biological macromolecules","volume":"58","author":"Eigen","year":"1971","journal-title":"Naturwiss"},{"key":"10.1016\/j.biosystems.2009.07.009_bib11","doi-asserted-by":"crossref","first-page":"1451","DOI":"10.1126\/science.280.5368.1451","article-title":"Continuity in evolution: on the nature of transitions","volume":"280","author":"Fontana","year":"1998","journal-title":"Science"},{"key":"10.1016\/j.biosystems.2009.07.009_bib12","doi-asserted-by":"crossref","first-page":"5407","DOI":"10.1063\/1.533417","article-title":"Lie superalgebras and the multiplet structure of the genetic code","volume":"41","author":"Forger","year":"2000","journal-title":"J. Math. Phys."},{"key":"10.1016\/j.biosystems.2009.07.009_bib13","doi-asserted-by":"crossref","first-page":"2485","DOI":"10.1142\/S0217979200002028","article-title":"A model of the genetic code","volume":"14","author":"Frappat","year":"2000","journal-title":"Int. J. Mod. Phys. B"},{"key":"10.1016\/j.biosystems.2009.07.009_bib14","doi-asserted-by":"crossref","first-page":"511","DOI":"10.1093\/oxfordjournals.molbev.a026331","article-title":"Early fixation of an optimal genetic code","volume":"17","author":"Freeland","year":"2000","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.biosystems.2009.07.009_bib15","doi-asserted-by":"crossref","first-page":"420","DOI":"10.1126\/science.153.3734.420","article-title":"Genetic code: aspects of organization","volume":"153","author":"Goldberg","year":"1966","journal-title":"Science"},{"key":"10.1016\/j.biosystems.2009.07.009_bib16","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1007\/s11084-007-9071-8","article-title":"Error-reducing structure of the genetic code indicates code origin in non-thermophile organisms","volume":"38","author":"Gutfraind","year":"2008","journal-title":"Origins Life Evol. Biosph."},{"key":"10.1016\/j.biosystems.2009.07.009_bib17","doi-asserted-by":"crossref","first-page":"2795","DOI":"10.1142\/S021797929900268X","article-title":"Symmetry and symmetry breaking: an algebraic approach to the genetic code","volume":"13","author":"Hornos","year":"1999","journal-title":"Int. J. Mod. Phys. B"},{"key":"10.1016\/j.biosystems.2009.07.009_bib18","doi-asserted-by":"crossref","first-page":"153","DOI":"10.1016\/S0014-5793(97)01422-1","article-title":"Chain-termination codons and polymerase-induced frameshift mutations","volume":"419","author":"Jestin","year":"1997","journal-title":"FEBS Lett."},{"key":"10.1016\/j.biosystems.2009.07.009_bib19","doi-asserted-by":"crossref","first-page":"168","DOI":"10.1016\/j.crvi.2006.01.003","article-title":"Degeneracy in the genetic code and its symmetries by base substitutions","volume":"329","author":"Jestin","year":"2006","journal-title":"Comptes Rendus Biol."},{"key":"10.1016\/j.biosystems.2009.07.009_bib20","doi-asserted-by":"crossref","first-page":"391","DOI":"10.1016\/j.jtbi.2007.03.008","article-title":"Symmetries by base substitutions in the genetic code predict 2\u2032 or 3\u2032 aminoacylation of tRNAs","volume":"247","author":"Jestin","year":"2007","journal-title":"J. Theor. Biol."},{"key":"10.1016\/j.biosystems.2009.07.009_bib21","first-page":"100","article-title":"Degeneracy in the genetic code: how and why?","volume":"1","author":"Jestin","year":"2007","journal-title":"Genes Genomes Genomics"},{"key":"10.1016\/j.biosystems.2009.07.009_bib22","series-title":"Arithmetic of Quadratic Forms","author":"Kitaoka","year":"1993"},{"key":"10.1016\/j.biosystems.2009.07.009_bib23","doi-asserted-by":"crossref","first-page":"99","DOI":"10.1002\/iub.146","article-title":"Origin and evolution of the genetic code: the universal enigma","volume":"61","author":"Koonin","year":"2009","journal-title":"IUBMB Life"},{"key":"10.1016\/j.biosystems.2009.07.009_bib24","doi-asserted-by":"crossref","first-page":"5787","DOI":"10.1016\/S0021-9258(18)89090-1","article-title":"The mutational specificity of DNA polymerase-beta during in vitro DNA synthesis. Production of frameshift, base substitution, and deletion mutations","volume":"260","author":"Kunkel","year":"1985","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.biosystems.2009.07.009_bib25","doi-asserted-by":"crossref","first-page":"12866","DOI":"10.1016\/S0021-9258(17)38958-5","article-title":"The mutational specificity of DNA polymerases-alpha and -gamma during in vitro DNA synthesis","volume":"260","author":"Kunkel","year":"1985","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.biosystems.2009.07.009_bib26","doi-asserted-by":"crossref","first-page":"1759","DOI":"10.1073\/pnas.75.4.1759","article-title":"\u201cTwo out of three\u201d: an alternative method for codon reading","volume":"75","author":"Lagerkvist","year":"1978","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"10.1016\/j.biosystems.2009.07.009_bib27","doi-asserted-by":"crossref","first-page":"129","DOI":"10.1006\/jtbi.1999.1045","article-title":"Physico-chemical constraints connected with the coding properties of the genetic system","volume":"202","author":"Lehmann","year":"2000","journal-title":"J. Theor. Biol."},{"key":"10.1016\/j.biosystems.2009.07.009_bib28","doi-asserted-by":"crossref","first-page":"1264","DOI":"10.1261\/rna.1029808","article-title":"Degeneracy of the genetic code and stability of the base pair at the second position of the anticodon","volume":"14","author":"Lehmann","year":"2008","journal-title":"RNA"},{"key":"10.1016\/j.biosystems.2009.07.009_bib29","doi-asserted-by":"crossref","first-page":"83","DOI":"10.1016\/S0303-2647(02)00009-6","article-title":"Construction of genetic code from evolutionary stability","volume":"65","author":"Luo","year":"2002","journal-title":"Biosystems"},{"key":"10.1016\/j.biosystems.2009.07.009_bib30","series-title":"The Major Transitions in Evolution","author":"Maynard-Smith","year":"1995"},{"key":"10.1016\/j.biosystems.2009.07.009_bib31","series-title":"Mathematics and Physics","author":"Manin","year":"1981"},{"key":"10.1016\/j.biosystems.2009.07.009_bib32","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1016\/0022-2836(71)90084-2","article-title":"Codon\u2013anticodon recognition: the missing triplet hypothesis","volume":"56","author":"Ninio","year":"1971","journal-title":"J. Mol. Biol."},{"key":"10.1016\/j.biosystems.2009.07.009_bib33","doi-asserted-by":"crossref","first-page":"455","DOI":"10.1016\/0305-1978(86)90001-3","article-title":"Divergence in the genetic code","volume":"14","author":"Ninio","year":"1986","journal-title":"Biochem. Syst. Ecol."},{"key":"10.1016\/j.biosystems.2009.07.009_bib34","doi-asserted-by":"crossref","first-page":"191","DOI":"10.1016\/0168-9525(88)90075-3","article-title":"Evolution of the genetic code as affected by anticodon content","volume":"4","author":"Osawa","year":"1988","journal-title":"Trends Genet."},{"key":"10.1016\/j.biosystems.2009.07.009_bib35","doi-asserted-by":"crossref","first-page":"229","DOI":"10.1128\/MMBR.56.1.229-264.1992","article-title":"Recent evidence for evolution of the genetic code","volume":"56","author":"Osawa","year":"1992","journal-title":"Microbiol. Rev."},{"key":"10.1016\/j.biosystems.2009.07.009_bib36","doi-asserted-by":"crossref","first-page":"765","DOI":"10.1103\/RevModPhys.58.765","article-title":"Ultrametricity for physicists","volume":"58","author":"Rammal","year":"1986","journal-title":"Rev. Mod. Phys."},{"key":"10.1016\/j.biosystems.2009.07.009_bib37","doi-asserted-by":"crossref","first-page":"4723","DOI":"10.1073\/pnas.90.10.4723","article-title":"Transfer RNAs with complementary anticodons: could they reflect early evolution of discriminative genetic code adaptors?","volume":"90","author":"Rodin","year":"1993","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"10.1016\/j.biosystems.2009.07.009_bib38","first-page":"1393","article-title":"About the codon's systematization in the genetic code","volume":"167","author":"Rumer","year":"1966","journal-title":"Proc. Acad. Sci. USSR"},{"key":"10.1016\/j.biosystems.2009.07.009_bib39","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/S0303-2647(02)00159-4","article-title":"A mathematical model accounting for the organization in multiplets of the genetic code","volume":"69","author":"Sciarrino","year":"2003","journal-title":"Biosystems"},{"key":"10.1016\/j.biosystems.2009.07.009_bib40","doi-asserted-by":"crossref","first-page":"542","DOI":"10.1007\/s00114-002-0377-0","article-title":"Chemical interactions between amino acids and RNA: multiplicity of the levels of specificity explains origin of the genetic code","volume":"89","author":"Seligmann","year":"2002","journal-title":"Naturwiss"},{"key":"10.1016\/j.biosystems.2009.07.009_bib41","doi-asserted-by":"crossref","first-page":"638","DOI":"10.1007\/s00239-001-0060-7","article-title":"The impact of message mutation on the fitness of a genetic code","volume":"54","author":"Sella","year":"2002","journal-title":"J. Mol. Evol."},{"key":"10.1016\/j.biosystems.2009.07.009_bib42","doi-asserted-by":"crossref","first-page":"831","DOI":"10.1534\/genetics.104.037887","article-title":"A unified model of codon reassignment in alternative genetic codes","volume":"170","author":"Sengupta","year":"2005","journal-title":"Genetics"},{"key":"10.1016\/j.biosystems.2009.07.009_bib43","series-title":"A Course in Arithmetic","author":"Serre","year":"1973"},{"key":"10.1016\/j.biosystems.2009.07.009_bib44","doi-asserted-by":"crossref","first-page":"271","DOI":"10.1016\/S0022-5193(89)80104-3","article-title":"Rumer's rule and transformation in the context of the co-operative symmetry of the genetic code","volume":"139","author":"Shcherbak","year":"1989","journal-title":"J. Theor. Biol."},{"key":"10.1016\/j.biosystems.2009.07.009_bib45","doi-asserted-by":"crossref","first-page":"195","DOI":"10.1016\/0022-2836(81)90087-5","article-title":"Identification of common molecular subsequences","volume":"147","author":"Smith","year":"1981","journal-title":"J. Mol. Biol."},{"key":"10.1016\/j.biosystems.2009.07.009_bib46","doi-asserted-by":"crossref","unstructured":"Sonneborn, T.M., 1965. Degeneracy of the genetic code: extent, nature and genetic implications. In: Bryson, Vogel (Eds.), Evolving Genes and Proteins. Academic Press, New York, pp. 377\u2013397.","DOI":"10.1016\/B978-1-4832-2734-4.50034-6"},{"key":"10.1016\/j.biosystems.2009.07.009_bib47","doi-asserted-by":"crossref","first-page":"223","DOI":"10.1016\/S0168-9525(99)01730-8","article-title":"The origin of the genetic code: amino acids as cofactors in an RNA world","volume":"15","author":"Szathmary","year":"1999","journal-title":"Trends Genet."},{"key":"10.1016\/j.biosystems.2009.07.009_bib48","doi-asserted-by":"crossref","first-page":"729","DOI":"10.1016\/j.cellbi.2004.06.006","article-title":"Chance and necessity do not explain the origin of life","volume":"28","author":"Trevors","year":"2004","journal-title":"Cell Biol. Int."},{"key":"10.1016\/j.biosystems.2009.07.009_bib49","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1016\/j.plrev.2008.03.001","article-title":"Tracing life back to elements","volume":"5","author":"Trifonov","year":"2008","journal-title":"Phys. Life Rev."},{"key":"10.1016\/j.biosystems.2009.07.009_bib50","doi-asserted-by":"crossref","first-page":"498","DOI":"10.1126\/science.1060077","article-title":"Expanding the genetic code of E. coli","volume":"292","author":"Wang","year":"2001","journal-title":"Science"},{"key":"10.1016\/j.biosystems.2009.07.009_bib51","doi-asserted-by":"crossref","first-page":"1546","DOI":"10.1073\/pnas.54.6.1546","article-title":"On the evolution of the genetic code","volume":"54","author":"Woese","year":"1965","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"10.1016\/j.biosystems.2009.07.009_bib52","doi-asserted-by":"crossref","first-page":"1909","DOI":"10.1073\/pnas.72.5.1909","article-title":"A co-evolution theory of the genetic code","volume":"72","author":"Wong","year":"1975","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"10.1016\/j.biosystems.2009.07.009_bib53","doi-asserted-by":"crossref","first-page":"33","DOI":"10.1016\/0968-0004(81)90013-X","article-title":"Coevolution of the genetic code and amino acid biosynthesis","volume":"6","author":"Wong","year":"1981","journal-title":"Trends Biochem. Sci."}],"container-title":["Biosystems"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0303264709001294?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0303264709001294?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2021,10,10]],"date-time":"2021-10-10T03:35:12Z","timestamp":1633836912000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0303264709001294"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,1]]},"references-count":53,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2010,1]]}},"alternative-id":["S0303264709001294"],"URL":"https:\/\/doi.org\/10.1016\/j.biosystems.2009.07.009","relation":{},"ISSN":["0303-2647"],"issn-type":[{"value":"0303-2647","type":"print"}],"subject":[],"published":{"date-parts":[[2010,1]]}}}