乐胖代购免代理版

{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,10]],"date-time":"2024-09-10T18:32:30Z","timestamp":1725993150088},"reference-count":41,"publisher":"Elsevier","isbn-type":[{"type":"print","value":"9780128114322"}],"license":[{"start":{"date-parts":[[2019,1,1]],"date-time":"2019-01-01T00:00:00Z","timestamp":1546300800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019]]},"DOI":"10.1016\/b978-0-12-809633-8.20092-7","type":"book-chapter","created":{"date-parts":[[2018,7,4]],"date-time":"2018-07-04T18:07:28Z","timestamp":1530727648000},"page":"152-156","source":"Crossref","is-referenced-by-count":5,"title":["Genome Annotation: Perspective From Bacterial Genomes"],"prefix":"10.1016","author":[{"given":"Alan","family":"Christoffels","sequence":"first","affiliation":[]},{"given":"Peter","family":"van Heusden","sequence":"additional","affiliation":[]}],"member":"78","reference":[{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib200","doi-asserted-by":"crossref","first-page":"W3","DOI":"10.1093\/nar\/gkw343","author":"Afgan","year":"2016","journal-title":"Nucleic Acids Res. 44: Web Server issue"},{"issue":"12","key":"10.1016\/B978-0-12-809633-8.20092-7_bib1","doi-asserted-by":"crossref","first-page":"e82210","DOI":"10.1371\/journal.pone.0082210","article-title":"INDIGO \u2013 Integrated data warehouse of microbial genomes with examples from the red sea extremophiles","volume":"8","author":"Alam","year":"2013","journal-title":"PLOS ONE"},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib2","doi-asserted-by":"crossref","first-page":"2832e2833","DOI":"10.1093\/bioinformatics\/bth273","article-title":"A system for automated bacterial (genome) integrated annotation- SABIA","volume":"20","author":"Almeida","year":"2004","journal-title":"Bioinformatics"},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib100","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1186\/1471-2164-9-75","article-title":"The RAST Server: Rapid Annotations using Subsystems Technology","volume":"9","author":"Aziz","year":"2008","journal-title":"BMC Genomics"},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib3","doi-asserted-by":"crossref","first-page":"D301eD303","DOI":"10.1093\/nar\/gkl971","article-title":"The worldwide Protein Data Bank (wwPDB): Ensuring a single, uniform archive of PDB data","volume":"35","author":"Berman","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib4","doi-asserted-by":"crossref","first-page":"124e132","DOI":"10.1093\/bib\/4.2.124","article-title":"Viewing and annotating sequence data with Artemis","volume":"4","author":"Berriman","year":"2003","journal-title":"Brief. Bioinform."},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib5","doi-asserted-by":"crossref","first-page":"2607","DOI":"10.1093\/nar\/29.12.2607","article-title":"GeneMarkS: A selftraining method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions","volume":"29","author":"Besemer","year":"2001","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib6","doi-asserted-by":"crossref","first-page":"3533e3545","DOI":"10.1093\/nar\/gkl471","article-title":"AGMIAL: Implementing an annotation strategy for prokaryote genomes as a distributed system","volume":"34","author":"Bryson","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib7","doi-asserted-by":"crossref","first-page":"D190","DOI":"10.1093\/nar\/gkw1107","article-title":"InterPro in 2017 \u2013 Beyond protein family and domain annotations","volume":"45","author":"Finn","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib8","doi-asserted-by":"crossref","first-page":"D279","DOI":"10.1093\/nar\/gkv1344","article-title":"The Pfam protein families database: Towards a more sustainable future","volume":"44","author":"Finn","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib9","doi-asserted-by":"crossref","first-page":"44e57","DOI":"10.1093\/bioinformatics\/17.1.44","article-title":"Functional and structural genomics using PEDANT","volume":"17","author":"Frishman","year":"2001","journal-title":"Bioinformatics"},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib10","doi-asserted-by":"crossref","first-page":"302e310","DOI":"10.1016\/0300-9084(96)84761-4","article-title":"Fully automated genome analysis. that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture","volume":"78","author":"Gaasterland","year":"1996","journal-title":"Biochimie"},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib11","doi-asserted-by":"crossref","first-page":"33e35","DOI":"10.1016\/S0968-0004(99)01510-8","article-title":"The GeneQuiz web server: Protein functional analysis through the Web","volume":"25","author":"Hoersch","year":"2000","journal-title":"Trends Biochem. Sci."},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib12","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1186\/1471-2105-11-119","article-title":"Prodigal: Prokaryotic gene recognition and translation initiation site identification","volume":"11","author":"Hyatt","year":"2010","journal-title":"BMC Bioinform."},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib13","doi-asserted-by":"crossref","first-page":"D353","DOI":"10.1093\/nar\/gkw1092","article-title":"KEGG: New perspectives on genomes, pathways, diseases and drugs","volume":"45","author":"Kanehisa","year":"2017","journal-title":"Nucleic Acids Res."},{"journal-title":"Brief. Bioinform.","article-title":"Pathway tools version 19.0: Integrated Software for pathway\/genome informatics and systems biology","year":"2015","author":"Karp","key":"10.1016\/B978-0-12-809633-8.20092-7_bib14"},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib15","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1186\/1471-2105-6-151","article-title":"AutoFACT: An automatic functional annotation and classification tool","volume":"6","author":"Koski","year":"2005","journal-title":"BMC Bioinform."},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib16","doi-asserted-by":"crossref","first-page":"3100","DOI":"10.1093\/nar\/gkm160","article-title":"RNAmmer: Consistent and rapid annotation of ribosomal RNA genes","volume":"35","author":"Lagesen","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib17","doi-asserted-by":"crossref","first-page":"D348","DOI":"10.1093\/nar\/gks1243","article-title":"CDD: Conserved domains and protein three-dimensional structure","volume":"41","author":"Marchler-Bauer","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib18","doi-asserted-by":"crossref","first-page":"724","DOI":"10.1016\/j.resmic.2007.09.009","article-title":"Annotation, comparison and databases for hundreds of bacterial genomes","volume":"158","author":"Medigue","year":"2007","journal-title":"Res. Microbiol."},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib19","doi-asserted-by":"crossref","first-page":"2187e2195","DOI":"10.1093\/nar\/gkg312","article-title":"GenDBdan open source genome annotation system for prokaryote genomes","volume":"31","author":"Meyer","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib20","doi-asserted-by":"crossref","first-page":"387","DOI":"10.1093\/dnares\/dsn027","article-title":"MetaGeneAnnotator: Detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes","volume":"15","author":"Noguchi","year":"2008","journal-title":"DNA Res."},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib21","doi-asserted-by":"crossref","first-page":"58","DOI":"10.1016\/j.shpsc.2011.10.006","article-title":"The roles of integration in molecular systems biology","volume":"43","author":"O\u2019Malley","year":"2012","journal-title":"Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences"},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib22","doi-asserted-by":"crossref","first-page":"164e171","DOI":"10.1093\/nar\/gkg148","article-title":"The ERGO genome analysis and discovery system","volume":"31","author":"Overbeek","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib23","doi-asserted-by":"crossref","first-page":"D61eD65","DOI":"10.1093\/nar\/gkl842","article-title":"NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins","volume":"35","author":"Pruitt","year":"2007","journal-title":"Nucleic Acids Res."},{"issue":"45","key":"10.1016\/B978-0-12-809633-8.20092-7_bib300","doi-asserted-by":"crossref","first-page":"19126","DOI":"10.1073\/pnas.0906412106","article-title":"Shifting the genomic gold standard for the prokaryotic species definition","volume":"106","author":"Richter","year":"2009","journal-title":"PNAS"},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib24","doi-asserted-by":"crossref","first-page":"W686","DOI":"10.1093\/nar\/gki366","article-title":"The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs","volume":"33","author":"Schattner","year":"2005","journal-title":"Nucleic Acids Res."},{"issue":"14","key":"10.1016\/B978-0-12-809633-8.20092-7_bib400","doi-asserted-by":"crossref","first-page":"2068","DOI":"10.1093\/bioinformatics\/btu153","article-title":"Prokka: Rapid prokaryotic genome annotation","volume":"30","author":"Seemann","year":"2014","journal-title":"Bioinformatics"},{"issue":"4","key":"10.1016\/B978-0-12-809633-8.20092-7_bib500","doi-asserted-by":"crossref","first-page":"362","DOI":"10.1111\/j.1751-7915.2010.00191.x","article-title":"Genome (re-)annotation and open-source annotation pipelines","volume":"3","author":"Siezen","year":"2010","journal-title":"Microbial Biotechnology"},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib25","doi-asserted-by":"crossref","first-page":"D344","DOI":"10.1093\/nar\/gks1067","article-title":"New and continuing developments at PROSITE","volume":"41","author":"Sigrist","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib26","doi-asserted-by":"crossref","first-page":"3163","DOI":"10.1093\/bioinformatics\/bts577","article-title":"InterMine: A flexible data warehouse system for the integration and analysis of heterogeneous biological data","volume":"28","author":"Smith","year":"2012","journal-title":"Bioinformatics"},{"issue":"8","key":"10.1016\/B978-0-12-809633-8.20092-7_bib700","doi-asserted-by":"crossref","first-page":"e103833","DOI":"10.1371\/journal.pone.0103833","article-title":"GHOSTX: An Improved Sequence Homology Search Algorithm Using a Query Suffix Array and a Database Suffix Array","volume":"9","author":"Suzuki","year":"2014","journal-title":"PLoS ONE"},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib27","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1186\/1471-2105-4-41","article-title":"The COG database: An updated version includes eukaryotes","volume":"4","author":"Tatusov","year":"2003","journal-title":"BMC Bioinform."},{"issue":"6","key":"10.1016\/B978-0-12-809633-8.20092-7_bib800","doi-asserted-by":"crossref","first-page":"1037","DOI":"10.1093\/bioinformatics\/btx713","article-title":"DFAST: A flexible prokaryotic genome annotation pipeline for faster genome publication","volume":"34","author":"Tanizawa.","year":"2017","journal-title":"Bioinformatics"},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib28","first-page":"D193eD197","article-title":"The universal protein resource (Uni-Prot)","volume":"35","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib29","unstructured":"Triplet T., Butler G., 2011. Systems biology warehousing: Challenges and strategies toward effective data integration. In: Proceedings of the 3rd International Conference on Advances in Databases, Knowledge, and Data Applications, St. Maarten. IARIA. pp 34\u201340."},{"issue":"1","key":"10.1016\/B978-0-12-809633-8.20092-7_bib900","doi-asserted-by":"crossref","first-page":"53","DOI":"10.1093\/nar\/gkj406","article-title":"MaGe: A microbial genome annotation system supported by synteny results","volume":"34","author":"Vallenet","year":"2006","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib30","doi-asserted-by":"crossref","first-page":"W455eW459","DOI":"10.1093\/nar\/gki593","article-title":"BASys: A web server for automated bacterial genome annotation","volume":"33","author":"Van Domselaar","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib31","doi-asserted-by":"crossref","first-page":"D358eD362","DOI":"10.1093\/nar\/gkl825","article-title":"STRING 7- recent developments in the integration and prediction of protein interactions","volume":"35","author":"Von Mering","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib150","doi-asserted-by":"crossref","first-page":"205","DOI":"10.1186\/gb-2013-14-5-205","article-title":"Machine learning and genome annotation: a match meant to be?","volume":"14","author":"Yip","year":"2013","journal-title":"Genome Biology"},{"key":"10.1016\/B978-0-12-809633-8.20092-7_bib161","doi-asserted-by":"crossref","first-page":"935","DOI":"10.1126\/science.282.5390.935","article-title":"Heterocyst pattern formation controlled by a diffusible peptide","volume":"282","author":"Yoon","year":"1998","journal-title":"Science"}],"container-title":["Encyclopedia of Bioinformatics and Computational Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:B9780128096338200927?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:B9780128096338200927?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2019,1,21]],"date-time":"2019-01-21T19:00:56Z","timestamp":1548097256000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/B9780128096338200927"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019]]},"ISBN":["9780128114322"],"references-count":41,"URL":"https:\/\/doi.org\/10.1016\/b978-0-12-809633-8.20092-7","relation":{},"subject":[],"published":{"date-parts":[[2019]]}}}