{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,15]],"date-time":"2024-09-15T23:51:05Z","timestamp":1726444265354},"reference-count":25,"publisher":"Springer Science and Business Media LLC","issue":"2","license":[{"start":{"date-parts":[[2014,5,6]],"date-time":"2014-05-06T00:00:00Z","timestamp":1399334400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Int J CARS"],"published-print":{"date-parts":[[2015,2]]},"DOI":"10.1007\/s11548-014-1007-y","type":"journal-article","created":{"date-parts":[[2014,5,5]],"date-time":"2014-05-05T03:22:27Z","timestamp":1399260147000},"page":"117-128","update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":37,"title":["PyDBS: an automated image processing workflow for deep brain stimulation surgery"],"prefix":"10.1007","volume":"10","author":[{"given":"Tiziano","family":"D\u2019Albis","sequence":"first","affiliation":[]},{"given":"Claire","family":"Haegelen","sequence":"additional","affiliation":[]},{"given":"Caroline","family":"Essert","sequence":"additional","affiliation":[]},{"given":"Sara","family":"Fern\u00e1ndez-Vidal","sequence":"additional","affiliation":[]},{"given":"Florent","family":"Lalys","sequence":"additional","affiliation":[]},{"given":"Pierre","family":"Jannin","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2014,5,6]]},"reference":[{"issue":"12","key":"1007_CR1","doi-asserted-by":"crossref","first-page":"1314","DOI":"10.1136\/jnnp.2006.109694","volume":"78","author":"S Tisch","year":"2007","unstructured":"Tisch S, Zrinzo L, Limousin P, Bhatia KP, Quinn N, Ashkan K, Hariz M (2007) Effect of electrode contact location on clinical efficacy of pallidal deep brain stimulation in primary generalised dystonia. J Neurol Neurosurg Psychiatry 78(12):1314\u20131319","journal-title":"J Neurol Neurosurg Psychiatry"},{"issue":"1","key":"1007_CR2","doi-asserted-by":"crossref","first-page":"159","DOI":"10.1016\/j.jns.2009.08.003","volume":"287","author":"MK York","year":"2009","unstructured":"York MK, Wilde EA, Simpson R, Jankovic J (2009) Relationship between neuropsychological outcome and dbs surgical trajectory and electrode location. J Neurol Sci 287(1):159\u2013171","journal-title":"J Neurol Sci"},{"key":"1007_CR3","doi-asserted-by":"crossref","unstructured":"Lalys F, Haegelen C, Mehri M, Drapier S, Verin M, Jannin P (2013) Anatomo-clinical atlases correlate clinical data and electrode contact coordinates: application to subthalamic deep brain stimulation. J Neurosci Methods 212(2):297\u2013307","DOI":"10.1016\/j.jneumeth.2012.11.002"},{"issue":"1","key":"1007_CR4","doi-asserted-by":"crossref","first-page":"15","DOI":"10.3174\/ajnr.A1644","volume":"31","author":"D Dormont","year":"2010","unstructured":"Dormont D, Seidenwurm D, Galanaud D, Cornu P, Yelnik J, Bardinet E (2010) Neuroimaging and deep brain stimulation. AJNR Am J Neuroradiol 31(1):15\u201323","journal-title":"AJNR Am J Neuroradiol"},{"issue":"5","key":"1007_CR5","doi-asserted-by":"crossref","first-page":"231","DOI":"10.3109\/10929080600997232","volume":"11","author":"T Guo","year":"2006","unstructured":"Guo T, Finnis KW, Parrent AG, Peters TM (2006) Visualization and navigation system development and application for stereotactic deep-brain neurosurgeries. Comput Aided Surg 11(5):231\u2013239","journal-title":"Comput Aided Surg"},{"key":"1007_CR6","series-title":"Cicerone: stereotactic neurophysiological recording and deep brain stimulation electrode placement software system","volume-title":"Operative neuromodulation","author":"S Miocinovic","year":"2007","unstructured":"Miocinovic S, Noecker A, Maks C, Butson C, McIntyre CC (2007) Operative neuromodulation., Cicerone: stereotactic neurophysiological recording and deep brain stimulation electrode placement software systemSpringer, Berlin"},{"issue":"3","key":"1007_CR7","doi-asserted-by":"crossref","first-page":"744","DOI":"10.1016\/j.media.2010.07.009","volume":"16","author":"PF DHaese","year":"2012","unstructured":"DHaese PF, Pallavaram S, Li R, Remple MS, Kao C, Neimat JS, Konrad PE, Dawant BM (2012) Cranialvault and its crave tools: a clinical computer assistance system for deep brain stimulation (DBS) therapy. Med Image Anal 16(3):744\u2013753","journal-title":"Med Image Anal"},{"key":"1007_CR8","first-page":"11","volume":"17","author":"S Pallavaram","year":"2013","unstructured":"Pallavaram S, Phibbs FT, Tolleson C, Davis TL, Fang J, Hedera P, Li R, Koyama T, Dawant BM, D\u2019Haese PF (2013) Neurologist consistency in interpreting information provided by an interactive visualization software for deep brain stimulation postoperative programming assistance. Neuromodulation: Technology at the Neural. Interface 17:11\u201315","journal-title":"Interface"},{"key":"1007_CR9","doi-asserted-by":"crossref","unstructured":"Fedorov A, Beichel R, Kalpathy-Cramer J, Finet J, Fillion-Robin JC, Pujol S et al (2012) 3D Slicer as an image computing platform for the Quantitative Imaging Network. Magn Reson Imaging 30(9):1323\u20131341","DOI":"10.1016\/j.mri.2012.05.001"},{"key":"1007_CR10","unstructured":"3D Slicer. http:\/\/www.slicer.org . Accessed 2013-04-05"},{"issue":"6","key":"1007_CR11","doi-asserted-by":"crossref","first-page":"1283","DOI":"10.3171\/2008.12.JNS08885","volume":"110","author":"L Zrinzo","year":"2009","unstructured":"Zrinzo L, van Hulzen AL, Gorgulho AA, Limousin P, Staal MJ, De Salles AA, Hariz MI (2009) Avoiding the ventricle: a simple step to improve accuracy of anatomical targeting during deep brain stimulation: clinical article. J Neurosurg 110(6):1283\u20131290","journal-title":"J Neurosurg"},{"key":"1007_CR12","unstructured":"Neuroimaging Informatics Technology Initiative. http:\/\/nifti.nimh.nih.gov . Accessed 2013-04-05"},{"key":"1007_CR13","unstructured":"Rivi\u00e8re D, R\u00e9gis J, Cointepas Y, Papadopoulos-Orfanos D, Cachia A, Mangin J (2003) A freely available anatomist\/brainvisa package for structural morphometry of the cortical sulci. Neuroimage 19(2 part 2):19\u201322"},{"key":"1007_CR14","unstructured":"BrainVISA Morphologist. http:\/\/brainvisa.info . Accessed 2013-04-05"},{"key":"1007_CR15","doi-asserted-by":"crossref","unstructured":"Pallavaram S, Yu H, Spooner J, DHaese PF, Bodenheimer B, Konrad PE, Dawant BM (2008) Intersurgeon variability in the selection of anterior and posterior commissures and its potential effects on target localization. Stereotact Funct Neurosurg 86(2):113\u2013119","DOI":"10.1159\/000116215"},{"issue":"2","key":"1007_CR16","doi-asserted-by":"crossref","first-page":"143","DOI":"10.1016\/S1361-8415(01)00036-6","volume":"5","author":"M Jenkinson","year":"2001","unstructured":"Jenkinson M, Smith S et al (2001) A global optimisation method for robust affine registration of brain images. Med Imag Anal 5(2):143\u2013156","journal-title":"Med Imag Anal"},{"issue":"2","key":"1007_CR17","doi-asserted-by":"crossref","first-page":"825","DOI":"10.1006\/nimg.2002.1132","volume":"17","author":"M Jenkinson","year":"2002","unstructured":"Jenkinson M, Bannister P, Brady M, Smith S et al (2002) Improved optimization for the robust and accurate linear registration and motion correction of brain images. Neuroimage 17(2):825\u2013841","journal-title":"Neuroimage"},{"issue":"1","key":"1007_CR18","doi-asserted-by":"crossref","first-page":"99","DOI":"10.1007\/s11548-012-0675-8","volume":"8","author":"C Haegelen","year":"2013","unstructured":"Haegelen C, Coup\u00e9 P, Fonov V, Guizard N, Jannin P, Morandi X, Collins DL (2013) Automated segmentation of basal ganglia and deep brain structures in MRI of Parkinson\u2019s disease. Int J Comput Assist Radiol Surg 8(1):99\u2013110","journal-title":"Int J Comput Assist Radiol Surg"},{"key":"1007_CR19","doi-asserted-by":"crossref","unstructured":"Lalys F, Haegelen C, Abadie A, Jannin P, et al. (2009) Post-operative assessment in deep brain stimulation based on multimodal images: registration workflow and validation. In: Proceedings of SPIE, vol 7261, pp 72612M\u20131","DOI":"10.1117\/12.810475"},{"issue":"1","key":"1007_CR20","doi-asserted-by":"crossref","first-page":"26","DOI":"10.1016\/j.media.2007.06.004","volume":"12","author":"BB Avants","year":"2008","unstructured":"Avants BB, Epstein CL, Grossman M, Gee JC (2008) Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain. Med Imag Anal 12(1):26\u201341","journal-title":"Med Imag Anal"},{"key":"1007_CR21","unstructured":"Advanced Normalization ToolS. http:\/\/www.picsl.upenn.edu\/ANTS . Accessed 2013-04-05"},{"issue":"3","key":"1007_CR22","doi-asserted-by":"crossref","first-page":"786","DOI":"10.1016\/j.neuroimage.2008.12.037","volume":"46","author":"A Klein","year":"2009","unstructured":"Klein A, Andersson J, Ardekani BA, Ashburner J, Avants B, Chiang MC, Christensen GE, Collins DL, Gee J, Hellier P et al (2009) Evaluation of nonlinear deformation algorithms applied to human brain MRI registration. Neuroimage 46(3):786","journal-title":"Neuroimage"},{"issue":"5","key":"1007_CR23","doi-asserted-by":"crossref","first-page":"698","DOI":"10.1109\/TPAMI.1987.4767965","volume":"9","author":"KS Arun","year":"1987","unstructured":"Arun KS, Huang TS, Blostein SD (1987) Least-squares fitting of two 3-d point sets. IEEE Trans Pattern Anal Mach Intell 9(5):698\u2013700","journal-title":"IEEE Trans Pattern Anal Mach Intell"},{"issue":"4","key":"1007_CR24","doi-asserted-by":"crossref","first-page":"517","DOI":"10.1007\/s11548-011-0651-8","volume":"7","author":"C Essert","year":"2012","unstructured":"Essert C, Haegelen C, Lalys F, Abadie A, Jannin P (2012) Automatic computation of electrode trajectories for deep brain stimulation: a hybrid symbolic and numerical approach. Int J Comput Assist Radiol Surg 7(4):517\u2013532","journal-title":"Int J Comput Assist Radiol Surg"},{"issue":"1","key":"1007_CR25","doi-asserted-by":"crossref","first-page":"107","DOI":"10.1007\/s11548-013-0911-x","volume":"9","author":"F Lalys","year":"2014","unstructured":"Lalys F, Haegelen C, Dalbis T, Jannin P (2014) Analysis of electrode deformations in deep brain stimulation surgery. Int J Comput Assist Radiol Surg 9(1):107\u2013117","journal-title":"Int J Comput Assist Radiol Surg"}],"container-title":["International Journal of Computer Assisted Radiology and Surgery"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11548-014-1007-y.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s11548-014-1007-y\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11548-014-1007-y","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,8,10]],"date-time":"2019-08-10T03:11:54Z","timestamp":1565406714000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s11548-014-1007-y"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,5,6]]},"references-count":25,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2015,2]]}},"alternative-id":["1007"],"URL":"https:\/\/doi.org\/10.1007\/s11548-014-1007-y","relation":{},"ISSN":["1861-6410","1861-6429"],"issn-type":[{"value":"1861-6410","type":"print"},{"value":"1861-6429","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,5,6]]}}}