{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2022,4,3]],"date-time":"2022-04-03T06:20:59Z","timestamp":1648966859688},"reference-count":25,"publisher":"Springer Science and Business Media LLC","issue":"3","license":[{"start":{"date-parts":[[2010,6,19]],"date-time":"2010-06-19T00:00:00Z","timestamp":1276905600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J Math Model Algor"],"published-print":{"date-parts":[[2010,9]]},"DOI":"10.1007\/s10852-010-9137-x","type":"journal-article","created":{"date-parts":[[2010,6,18]],"date-time":"2010-06-18T11:35:12Z","timestamp":1276860912000},"page":"233-245","source":"Crossref","is-referenced-by-count":5,"title":["Identification of Regulatory Network Motifs from Gene Expression Data"],"prefix":"10.1007","volume":"9","author":[{"given":"Lorenzo","family":"Farina","sequence":"first","affiliation":[]},{"given":"Alfredo","family":"Germani","sequence":"additional","affiliation":[]},{"given":"Gabriella","family":"Mavelli","sequence":"additional","affiliation":[]},{"given":"Pasquale","family":"Palumbo","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2010,6,19]]},"reference":[{"key":"9137_CR1","doi-asserted-by":"crossref","first-page":"450","DOI":"10.1038\/nrg2102","volume":"8","author":"U Alon","year":"2007","unstructured":"Alon, U.: Network motifs: theory and experimental approaches. Nat. Rev., Genet. 8, 450\u2013461 (2007)","journal-title":"Nat. Rev., Genet."},{"key":"9137_CR2","first-page":"166","volume":"55","author":"D Angeli","year":"2008","unstructured":"Angeli, D., Sontag, E.D.: Oscillations in I\/O monotone systems. IEEE Trans. Circuits Syst. Spec. Issue Syst. Bio. 55, 166\u2013176 (2008)","journal-title":"IEEE Trans. Circuits Syst. Spec. Issue Syst. Bio."},{"issue":"8","key":"9137_CR3","doi-asserted-by":"crossref","first-page":"1536","DOI":"10.1109\/9.871767","volume":"45","author":"M Mora Dalla","year":"2000","unstructured":"Dalla Mora, M., Germani, A., Manes, C.: Design of state observers from a drift-observability property. IEEE Trans. Automat. Contr. 45(8), 1536\u20131540 (2000)","journal-title":"IEEE Trans. Automat. Contr."},{"issue":"1","key":"9137_CR4","doi-asserted-by":"crossref","first-page":"67","DOI":"10.1089\/10665270252833208","volume":"9","author":"H Jong de","year":"2002","unstructured":"de Jong, H.: Modeling and simulation of genetic regulatory systems: a literature review. J. Comput. Biol. 9(1), 67\u2013103 (2002)","journal-title":"J. Comput. Biol."},{"issue":"1","key":"9137_CR5","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1049\/iet-syb:20060031","volume":"1","author":"L Farina","year":"2007","unstructured":"Farina, L., De Santis, A., Morelli, G., Ruberti, I.: Dynamic measure of gene co-regulation. IET Syst. Biol. 1(1), 10\u201317 (2007)","journal-title":"IET Syst. Biol."},{"key":"9137_CR6","doi-asserted-by":"crossref","first-page":"601","DOI":"10.1089\/106652700750050961","volume":"7","author":"N Friedman","year":"2000","unstructured":"Friedman, N., Linial, M., Nachman, I., Pe\u2019er, D.: Using Bayesian networks to analyze expression data. J. Comp. Biol. 7, 601\u2013620 (2000)","journal-title":"J. Comp. Biol."},{"key":"9137_CR7","doi-asserted-by":"crossref","first-page":"65","DOI":"10.1016\/j.plrev.2005.01.001","volume":"2","author":"TS Gardner","year":"2005","unstructured":"Gardner, T.S., Faith, J.J.: Reverse-engineering transcription control networks. Physics of Life Reviews 2, 65\u201388 (2005)","journal-title":"Physics of Life Reviews"},{"key":"9137_CR8","doi-asserted-by":"crossref","first-page":"113","DOI":"10.1038\/nrm2104","volume":"8","author":"NL Garneau","year":"2007","unstructured":"Garneau, N.L., Wilusz, J., Wilusz, C.J.: The highways and byways of mRNA decay. Nat. Rev. Mol. Cell. Bio. 8, 113\u2013126 (2007)","journal-title":"Nat. Rev. Mol. Cell. Bio."},{"issue":"17","key":"9137_CR9","doi-asserted-by":"crossref","first-page":"2271","DOI":"10.1093\/bioinformatics\/btg313","volume":"19","author":"D Husmeier","year":"2003","unstructured":"Husmeier, D.: Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks. Bioinformatics 19(17), 2271\u20132282 (2003)","journal-title":"Bioinformatics"},{"key":"9137_CR10","doi-asserted-by":"crossref","first-page":"206","DOI":"10.1038\/nature01254","volume":"420","author":"H Kitano","year":"2002","unstructured":"Kitano, H.: Computational systems biology. Nature 420, 206\u2013210 (2002)","journal-title":"Nature"},{"key":"9137_CR11","doi-asserted-by":"crossref","first-page":"137","DOI":"10.1038\/msb4100179","volume":"3","author":"H Kitano","year":"2007","unstructured":"Kitano, H.: Towards a theory of biological robustness. Mol. Syst. Biol. 3, 137 (2007)","journal-title":"Mol. Syst. Biol."},{"issue":"3","key":"9137_CR12","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1371\/journal.pcbi.0030041","volume":"3","author":"S Krishna","year":"2007","unstructured":"Krishna, S., Maslov, S., Sneppen, K.: UV-induced mutagenesis in escherichia coli SOS response: a quantitative model. PLoS Comput Biol 3(3), e41 (2007)","journal-title":"PLoS Comput Biol"},{"issue":"25","key":"9137_CR13","doi-asserted-by":"crossref","first-page":"799","DOI":"10.1126\/science.1075090","volume":"298","author":"Lee","year":"2002","unstructured":"Lee et al.: Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 298(25), 799\u2013804 (2002)","journal-title":"Science"},{"issue":"16","key":"9137_CR14","doi-asserted-by":"crossref","first-page":"308","DOI":"10.1038\/nature02782","volume":"431","author":"NM Luscombe","year":"2004","unstructured":"Luscombe, N.M., Babu, M.M., Yu, H., Snyder, M., Teichmann, S.A., Gerstein, M.: Genomic analysis of regulatory network dynamics reveals large topological changes. Nature 431(16), 308\u2013312 (2004)","journal-title":"Nature"},{"issue":"2","key":"9137_CR15","doi-asserted-by":"crossref","first-page":"197","DOI":"10.1016\/j.jmb.2003.09.049","volume":"334","author":"S Mangan","year":"2003","unstructured":"Mangan, S., Zaslaver, A., Alon, U.: The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks. J. Mol. Biol. 334(2), 197\u2013204 (2003)","journal-title":"J. Mol. Biol."},{"key":"9137_CR16","unstructured":"Mogno, I., Farina, L., Gardner, T.: CRP drives a non-specific expression burst in E. coli sugar catabolic operons during starvation (submitted)"},{"key":"9137_CR17","doi-asserted-by":"crossref","first-page":"308","DOI":"10.1093\/comjnl\/7.4.308","volume":"7","author":"JA Nelder","year":"1965","unstructured":"Nelder, J.A., Mead, R.: A simplex method for function minimization. Comput. J. 7, 308\u2013313 (1965)","journal-title":"Comput. J."},{"key":"9137_CR18","doi-asserted-by":"crossref","unstructured":"Palumbo, M.C., Farina, L., De Santis, A., Giuliani, A., Colosimo, A., Morelli, G., Ruberti, I.: Collective behaviour in gene regulation: post-transcriptional regulation and the temporal compartmentalization of cellular cycles, FEBS J. 275, 2364\u20132371 (2008)","DOI":"10.1111\/j.1742-4658.2008.06398.x"},{"issue":"3","key":"9137_CR19","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1016\/j.jtbi.2004.05.022","volume":"230","author":"TJ Perkins","year":"2004","unstructured":"Perkins, T.J., Hallett, M., Glass, L.: Inferring models of gene expression dynamics. J. Theor. Biol. 230(3), 289\u2013299 (2004)","journal-title":"J. Theor. Biol."},{"issue":"5","key":"9137_CR20","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1371\/journal.pcbi.0020051","volume":"2","author":"TJ Perkins","year":"2006","unstructured":"Perkins, T.J., Jaeger, J., Reinitz, J., Glass, L.: Reverse engineering the gap gene network of drosophila melanogaster. PLoS Comput. Biol. 2(5), e51 (2006)","journal-title":"PLoS Comput. Biol."},{"key":"9137_CR21","doi-asserted-by":"crossref","unstructured":"Ripp, S., Moser, S., Weathers, B., Caylor, S., Blalock, B., Islam, S., Sayler, G.: Bioluminescent bioreporter integrated circuit (BBIC) sensors. In: Bio Micro and Nanosystems Conference, BMN \u201906, pp. 59-60. San Francisco, CA (2006)","DOI":"10.1109\/BMN.2006.330930"},{"issue":"13","key":"9137_CR22","doi-asserted-by":"crossref","first-page":"1640","DOI":"10.1093\/bioinformatics\/btm163","volume":"23","author":"N Soranzo","year":"2007","unstructured":"Soranzo, N., Bianconi, G., Altafini, C.: Comparing association network algorithms for reverse engineering of large scale gene regulatory networks: synthetic vs real data. Bioinformatics 23(13), 1640\u20131647 (2007)","journal-title":"Bioinformatics"},{"key":"9137_CR23","doi-asserted-by":"crossref","first-page":"675","DOI":"10.1016\/j.cell.2004.09.008","volume":"118","author":"J Stelling","year":"2004","unstructured":"Stelling, J., Sauer, U., Szallasi, Z., Doyle III, F.J., Doyle, J.: Robustness of cellular functions. Cell 118, 675\u2013685 (2004)","journal-title":"Cell"},{"issue":"9","key":"9137_CR24","doi-asserted-by":"crossref","first-page":"4649","DOI":"10.1073\/pnas.97.9.4649","volume":"97","author":"TM Yi","year":"2000","unstructured":"Yi, T.M., Huang, Y., Simon, M.I., Doyle, J.: Robust perfect adaptation in bacterial chemotaxis through integral feedback control. Proc. Natl. Acad. Sci. U.S.A. 97(9), 4649\u20134653 (2000)","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"9137_CR25","doi-asserted-by":"crossref","first-page":"623","DOI":"10.1038\/nmeth895","volume":"3","author":"A Zaslaver","year":"2006","unstructured":"Zaslaver, A., Bren, A., Ronen, M., Itzkovitz, S., Kikoin, I., Shavit, S., Liebermeister, W., Surette, M.G., Alon, U.: A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nature Methods 3, 623\u2013628 (2006)","journal-title":"Nature Methods"}],"container-title":["Journal of Mathematical Modelling and Algorithms"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10852-010-9137-x.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s10852-010-9137-x\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10852-010-9137-x","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,31]],"date-time":"2019-05-31T02:26:32Z","timestamp":1559269592000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s10852-010-9137-x"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,6,19]]},"references-count":25,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2010,9]]}},"alternative-id":["9137"],"URL":"https:\/\/doi.org\/10.1007\/s10852-010-9137-x","relation":{},"ISSN":["1570-1166","1572-9214"],"issn-type":[{"value":"1570-1166","type":"print"},{"value":"1572-9214","type":"electronic"}],"subject":[],"published":{"date-parts":[[2010,6,19]]}}}