{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,10,6]],"date-time":"2024-10-06T00:55:16Z","timestamp":1728176116473},"reference-count":29,"publisher":"Springer Science and Business Media LLC","issue":"3","license":[{"start":{"date-parts":[[2018,5,8]],"date-time":"2018-05-08T00:00:00Z","timestamp":1525737600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["J Digit Imaging"],"published-print":{"date-parts":[[2018,6]]},"DOI":"10.1007\/s10278-018-0089-4","type":"journal-article","created":{"date-parts":[[2018,5,8]],"date-time":"2018-05-08T18:31:10Z","timestamp":1525804270000},"page":"315-320","update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":13,"title":["Container-Based Clinical Solutions for Portable and Reproducible Image Analysis"],"prefix":"10.1007","volume":"31","author":[{"given":"Jordan","family":"Matelsky","sequence":"first","affiliation":[]},{"given":"Gregory","family":"Kiar","sequence":"additional","affiliation":[]},{"given":"Erik","family":"Johnson","sequence":"additional","affiliation":[]},{"given":"Corban","family":"Rivera","sequence":"additional","affiliation":[]},{"given":"Michael","family":"Toma","sequence":"additional","affiliation":[]},{"given":"William","family":"Gray-Roncal","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2018,5,8]]},"reference":[{"key":"89_CR1","unstructured":"Tanenbaum AS: Modern operating system. Pearson Education, Inc, 2009"},{"key":"89_CR2","doi-asserted-by":"crossref","unstructured":"Soltesz S, P\u00f6tzl H, Fiuczynski ME, Bavier A, Peterson L: Container-based operating system virtualization: a scalable, high-performance alternative to hypervisors.. In: ACM SIGOPS Operating Systems Review, vol 41. ACM, 2007, pp 275\u2013287","DOI":"10.1145\/1272998.1273025"},{"key":"89_CR3","unstructured":"Docker Accessed: 2018-03-15. \n https:\/\/www.docker.com"},{"key":"89_CR4","unstructured":"Singularity Accessed: 2018-03-15. \n http:\/\/singularity.lbl.gov"},{"key":"89_CR5","unstructured":"Virtual Environment virtualenv Documentation Accessed: 2018-03-15. \n https:\/\/virtualenv.pypa.io\/en\/stable\/"},{"key":"89_CR6","unstructured":"Clark C, Fraser K, Hand S, Hansen JG, Jul E, Limpach C, et al: Live migration of virtual machines.. In: Proceedings of the 2nd Conference on Symposium on Networked Systems Design & Implementation-Volume 2. USENIX Association, 2005, pp 273\u2013286"},{"key":"89_CR7","unstructured":"Amazon Web Services AMIs Accessed: 2018-03-15. \n https:\/\/docs.aws.amazon.com\/AWSEC2\/latest\/UserGuide\/AMIs.html"},{"key":"89_CR8","doi-asserted-by":"crossref","unstructured":"Goldberg RP: Survey of virtual machine research. Computer 7(6): 34\u201345, 1974","DOI":"10.1109\/MC.1974.6323581"},{"key":"89_CR9","unstructured":"Amazon Web Services FarGate Accessed: 2018-03-15. \n https:\/\/aws.amazon.com\/fargate\/"},{"key":"89_CR10","unstructured":"Google Cloud Accessed: 2018-03-15. \n https:\/\/cloud.google.com\/compute\/docs\/containers\/"},{"key":"89_CR11","unstructured":"Microsoft Azure Accessed: 2018-03-15. \n https:\/\/azure.microsoft.com\/en-us\/overview\/containers\/"},{"key":"89_CR12","doi-asserted-by":"publisher","unstructured":"Kiar G, Gorgolewski KJ, Kleissas D, Roncal WG, Litt B, Wandell B, et al: Science in the cloud (SIC): A use case in MRI connectomics. GigaScience 6(5): 1\u201310, 2017. Available from: \n https:\/\/doi.org\/10.1093\/gigascience\/gix013","DOI":"10.1093\/gigascience\/gix013"},{"key":"89_CR13","doi-asserted-by":"crossref","unstructured":"Sherif T, Rioux P, Rousseau ME, Kassis N, Beck N, Adalat R, et al: CBRAIN: A web-based, distributed computing platform for collaborative neuroimaging research. Frontiers in Neuroinformatics 8: 54, 2014","DOI":"10.3389\/fninf.2014.00054"},{"key":"89_CR14","doi-asserted-by":"crossref","unstructured":"Glatard T, Lartizien C, Gibaud B, Da Silva RF, Forestier G, Cervenansky F, et al: A virtual imaging platform for multi-modality medical image simulation. IEEE Trans Med Imaging 32(1): 110\u2013118, 2013","DOI":"10.1109\/TMI.2012.2220154"},{"key":"89_CR15","unstructured":"Merkel D: Docker: Lightweight Linux Containers for Consistent Development and Deployment. Linux J 2014(239):76\u201391, 2014. Available from: \n http:\/\/dl.acm.org\/citation.cfm?id=2600239.2600241"},{"key":"89_CR16","doi-asserted-by":"publisher","unstructured":"Kurtzer GM, Sochat V, Bauer MW: Available from: \n https:\/\/doi.org\/10.1371\/journal.pone.0177459\n \n . PLOS ONE 12(5): e0177459, 2017","DOI":"10.1371\/journal.pone.0177459"},{"key":"89_CR17","doi-asserted-by":"publisher","unstructured":"Di Tommaso P, Palumbo E, Chatzou M, Prieto P, Heuer ML, Notredame C: The impact of Docker containers on the performance of genomic pipelines. PeerJ 3: e1273, 2015. Available from: \n https:\/\/doi.org\/10.7717\/peerj.1273","DOI":"10.7717\/peerj.1273"},{"key":"89_CR18","unstructured":"Hindman B, Konwinski A, Zaharia M, Ghodsi A, Joseph AD, Katz R, et al: Mesos: A Platform for Fine-grained Resource Sharing in the Data Center.. In: Proceedings of the 8th USENIX Conference on Networked Systems Design and Implementation. NSDI\u201911. USENIX Association, Berkeley, 2011, pp 295\u2013308. Available from: \n http:\/\/dl.acm.org\/citation.cfm?id=1972457.1972488"},{"key":"89_CR19","doi-asserted-by":"crossref","unstructured":"Burns B, Grant B, Oppenheimer D, Brewer E, Wilkes J: Borg, Omega, and Kubernetes. ACM Queue 14: 70\u201393, 2016. Available from: \n http:\/\/queue.acm.org\/detail.cfm?id=2898444","DOI":"10.1145\/2898442.2898444"},{"key":"89_CR20","doi-asserted-by":"crossref","unstructured":"Afgan E, Baker D, Van den Beek M, Blankenberg D, Bouvier D, \u010cEch M, et al: The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Res 44 (W1): W3\u2013W10, 2016","DOI":"10.1093\/nar\/gkw343"},{"key":"89_CR21","unstructured":"Awesome Pipelines: Accessed: 2018-03-15. \n https:\/\/github.com\/pditommaso\/awesome-pipeline\/"},{"key":"89_CR22","doi-asserted-by":"publisher","unstructured":"Mason D: SU-E-T-33: Pydicom: An Open Source DICOM Library. Med Phys 38 (6Part10): 3493\u20133493, 2011. Available from: \n https:\/\/doi.org\/10.1118\/1.3611983","DOI":"10.1118\/1.3611983"},{"key":"89_CR23","unstructured":"Docker Hub: Accessed: 2018-03-15. \n https:\/\/hub.docker.com\/"},{"key":"89_CR24","unstructured":"Docker Hub: Accessed: 2018-03-15. \n https:\/\/github.com\/singularityware\/docker2singularity"},{"key":"89_CR25","doi-asserted-by":"publisher","unstructured":"Gronenschild EHBM, Habets P, Jacobs HIL, Mengelers R, Rozendaal N, van Os J, et al: The Effects of FreeSurfer Version, Workstation Type, and Macintosh Operating System Version on Anatomical Volume and Cortical Thickness Measurements. PLoS ONE 7(6): e38234, 2012. Available from: \n https:\/\/doi.org\/10.1371\/journal.pone.0038234","DOI":"10.1371\/journal.pone.0038234"},{"key":"89_CR26","doi-asserted-by":"crossref","unstructured":"Fischl B: Freesurfer. Neuroimage 62(2): 774\u2013781, 2012","DOI":"10.1016\/j.neuroimage.2012.01.021"},{"key":"89_CR27","unstructured":"Plesser HE: Reproducibility vs. Replicability: A Brief History of a Confused Terminology. Frontiers in neuroinformatics 11: 76, 2018"},{"key":"89_CR28","doi-asserted-by":"crossref","unstructured":"Towns J, Cockerill T, Dahan M, Foster I, Gaither K, Grimshaw A, et al: XSEDE: Accelerating Scientific discovery. Computing in Science & Engineering 16(5): 62\u201374, 2014","DOI":"10.1109\/MCSE.2014.80"},{"key":"89_CR29","doi-asserted-by":"crossref","unstructured":"Baldwin S: Compute Canada: Advancing Computational Research.. In: Journal of Physics: Conference Series, vol 341. IOP Publishing, 2012, p 012001","DOI":"10.1088\/1742-6596\/341\/1\/012001"}],"container-title":["Journal of Digital Imaging"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s10278-018-0089-4\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10278-018-0089-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10278-018-0089-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,8]],"date-time":"2019-05-08T00:09:23Z","timestamp":1557274163000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s10278-018-0089-4"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,5,8]]},"references-count":29,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2018,6]]}},"alternative-id":["89"],"URL":"https:\/\/doi.org\/10.1007\/s10278-018-0089-4","relation":{},"ISSN":["0897-1889","1618-727X"],"issn-type":[{"value":"0897-1889","type":"print"},{"value":"1618-727X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2018,5,8]]},"assertion":[{"value":"8 May 2018","order":1,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}]}}