{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,21]],"date-time":"2025-02-21T05:33:49Z","timestamp":1740116029617,"version":"3.37.3"},"publisher-location":"Berlin, Heidelberg","reference-count":22,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783642131301"},{"type":"electronic","value":"9783642131318"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010]]},"DOI":"10.1007\/978-3-642-13131-8_7","type":"book-chapter","created":{"date-parts":[[2010,5,12]],"date-time":"2010-05-12T15:58:58Z","timestamp":1273679938000},"page":"53-61","source":"Crossref","is-referenced-by-count":13,"title":["Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation"],"prefix":"10.1007","author":[{"given":"Dimitar","family":"Hristovski","sequence":"first","affiliation":[]},{"given":"Andrej","family":"Kastrin","sequence":"additional","affiliation":[]},{"given":"Borut","family":"Peterlin","sequence":"additional","affiliation":[]},{"given":"Thomas C.","family":"Rindflesch","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"key":"7_CR1","doi-asserted-by":"publisher","first-page":"265","DOI":"10.1093\/bfgp\/elm034","volume":"6","author":"F. Cordero","year":"2007","unstructured":"Cordero, F., Botta, M., Calogero, R.A.: Microarray data analysis and mining approaches. Brief Funct. Genomic Proteomic\u00a06, 265\u2013281 (2007)","journal-title":"Brief Funct. Genomic Proteomic"},{"key":"7_CR2","doi-asserted-by":"publisher","first-page":"462","DOI":"10.1016\/j.jbi.2003.11.003","volume":"36","author":"T.C. Rindflesch","year":"2003","unstructured":"Rindflesch, T.C., Fiszman, M.: The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text. J. Biomed. Inform.\u00a036, 462\u2013477 (2003)","journal-title":"J. Biomed. Inform."},{"issue":"Database issue","key":"7_CR3","doi-asserted-by":"publisher","first-page":"760","DOI":"10.1093\/nar\/gkl887","volume":"35","author":"T. Barrett","year":"2007","unstructured":"Barrett, T., Troup, D.B., Wilhite, S.E., Ledoux, P., Rudnev, D., Evangelista, C., Kim, I.F., Soboleva, A., Tomashevsky, M., Edgar, R.: NCBI GEO: Mining tens of millions of expression profiles - database and tools update. Nucleic Acids Res.\u00a035 (Database issue), D760\u2013D765 (2007)","journal-title":"Nucleic Acids Res."},{"key":"7_CR4","unstructured":"Shatkay, H., Edwards, S., Wilbur, W.J., Boguski, M.: Genes, themes and microarrays: using information retrieval for large-scale gene analysis. In: Proc. Int. Conf. Intell. Syst. Mol. Biol., pp. 317\u2013328 (2000)"},{"key":"7_CR5","doi-asserted-by":"publisher","first-page":"256","DOI":"10.1007\/s101420000036","volume":"1","author":"C. Blaschke","year":"2001","unstructured":"Blaschke, C., Oliveros, J.C., Valencia, A.: Mining functional information associated with expression arrays. Funct. Integr. Genomics\u00a01, 256\u2013268 (2001)","journal-title":"Funct. Integr. Genomics"},{"key":"7_CR6","unstructured":"Yang, J., Cohen, A.M., Hersh, W.: Automatic summarization of mouse gene information by clustering and sentence extraction from MEDLINE abstracts. In: AMIA Annu. Symp. Proc., pp. 831\u2013835 (2007)"},{"key":"7_CR7","doi-asserted-by":"publisher","first-page":"1000215","DOI":"10.1371\/journal.pcbi.1000215","volume":"3","author":"S.M. Leach","year":"2009","unstructured":"Leach, S.M., Tipney, H., Feng, W., Baumgartner, W.A., Kasliwal, P., Schuyler, R.P., Williams, T., Spritz, R.A., Hunter, L.: Biomedical discovery acceleration, with applications to craniofacial development. PLoS Comput. Biol.\u00a03, e1000215 (2009)","journal-title":"PLoS Comput. Biol."},{"key":"7_CR8","doi-asserted-by":"publisher","first-page":"291","DOI":"10.1186\/1471-2105-9-291","volume":"9","author":"R. Jelier","year":"2008","unstructured":"Jelier, R., \u2019t Hoen, P.A., Sterrenburg, E., den Dunnen, J.T., van Ommen, G.J., Kors, J.A., Mons, B.: Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease. BMC Bioinformatics\u00a09, 291 (2008)","journal-title":"BMC Bioinformatics"},{"key":"7_CR9","doi-asserted-by":"publisher","first-page":"1995","DOI":"10.1093\/bioinformatics\/btm261","volume":"23","author":"M.F. Burkart","year":"2007","unstructured":"Burkart, M.F., Wren, J.D., Herschkowitz, J.I., Perou, C.M., Garner, H.R.: Clustering microarray-derived gene lists through implicit literature relationships. Bioinformatics\u00a023, 1995\u20132003 (2007)","journal-title":"Bioinformatics"},{"key":"7_CR10","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1353\/pbm.1986.0087","volume":"30","author":"D.R. Swanson","year":"1986","unstructured":"Swanson, D.R.: Fish oil, Raynaud\u2019s syndrome, and undiscovered public knowledge. Perspect Biol. Med.\u00a030, 7\u201318 (1986)","journal-title":"Perspect Biol. Med."},{"key":"7_CR11","doi-asserted-by":"publisher","first-page":"289","DOI":"10.1016\/j.ijmedinf.2004.04.024","volume":"74","author":"D. Hristovski","year":"2005","unstructured":"Hristovski, D., Peterlin, B., Mitchell, J.A., Humphrey, S.M.: Using literature-based discovery to identify disease candidate genes. Int. J. Med. Inform.\u00a074, 289\u2013298 (2005)","journal-title":"Int. J. Med. Inform."},{"key":"7_CR12","unstructured":"Hristovski, D., Friedman, C., Rindflesch, T.C., Peterlin, B.: Exploiting semantic relations for literature-based discovery. In: AMIA Annu. Symp. Proc., pp. 349\u2013353 (2006)"},{"key":"7_CR13","unstructured":"Ahlers, C.B., Hristovski, D., Kilicoglu, H., Rindflesch, T.C.: Using the literature-based discovery paradigm to investigate drug mechanisms. In: AMIA Annu. Symp. Proc., pp. 6\u201310 (2007)"},{"key":"7_CR14","doi-asserted-by":"publisher","first-page":"291","DOI":"10.1186\/1471-2105-7-291","volume":"7","author":"M. Masseroli","year":"2006","unstructured":"Masseroli, M., Kilicoglu, H., Lang, F.M., Rindflesch, T.C.: Argument-predicate distance as a filter for enhancing precision in extracting predications on the genetic etiology of disease. BMC Bioinformatics\u00a07, 291 (2006)","journal-title":"BMC Bioinformatics"},{"key":"7_CR15","doi-asserted-by":"crossref","unstructured":"Ahlers, C.B., Fiszman, M., Demner-Fushman, D., Lang, F.M., Rindflesch, T.C.: Extracting semantic predications from Medline citations for pharmacogenomics. In: Pac. Symp. Biocomput., pp. 209\u2013220 (2007)","DOI":"10.1142\/9789812772435_0021"},{"key":"7_CR16","unstructured":"Aronson, A.R.: Effective mapping of biomedical text to the UMLS Metathesaurus: The MetaMap program. In: Proc. AMIA Symp., pp. 17\u201321 (2001)"},{"key":"7_CR17","doi-asserted-by":"publisher","first-page":"1124","DOI":"10.1093\/bioinformatics\/18.8.1124","volume":"18","author":"L. Tanabe","year":"2002","unstructured":"Tanabe, L., Wilbur, W.J.: Tagging gene and protein names in biomedical text. Bioinformatics\u00a018, 1124\u20131132 (2002)","journal-title":"Bioinformatics"},{"key":"7_CR18","unstructured":"R Development Core Team.: R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria (2008)"},{"key":"7_CR19","doi-asserted-by":"publisher","first-page":"80","DOI":"10.1186\/gb-2004-5-10-r80","volume":"5","author":"R.C. Gentleman","year":"2004","unstructured":"Gentleman, R.C., et al.: Bioconductor: Open software development for computational biology and bioinformatics. Genome Biol.\u00a05, R80 (2004)","journal-title":"Genome Biol."},{"key":"7_CR20","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","volume":"57","author":"Y. Benjamini","year":"1995","unstructured":"Benjamini, Y., Hochberg, Y.: Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. Roy Stat. Soc. B\u00a057, 289\u2013300 (1995)","journal-title":"J. Roy Stat. Soc. B"},{"key":"7_CR21","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s10048-005-0020-2","volume":"7","author":"L.B. Moran","year":"2006","unstructured":"Moran, L.B., Duke, D.C., Deprez, M., Dexter, D.T., Pearce, R.K., Graeber, M.B.: Whole genome expression profiling of the medial and lateral substantia nigra in Parkinson\u2019s disease. Neurogenetics\u00a07, 1\u201311 (2006)","journal-title":"Neurogenetics"},{"key":"7_CR22","doi-asserted-by":"publisher","first-page":"1288","DOI":"10.1002\/jnr.21240","volume":"85","author":"L.R. White","year":"2007","unstructured":"White, L.R., Toft, M., Kvam, S.N., Farrer, M.J., Aasly, J.O.: MAPK-pathway activity, Lrrk2 G2019S, and Parkinson\u2019s disease. J. Neurosci. Res.\u00a085, 1288\u20131294 (2007)","journal-title":"J. Neurosci. Res."}],"container-title":["Lecture Notes in Computer Science","Linking Literature, Information, and Knowledge for Biology"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-642-13131-8_7.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,2,20]],"date-time":"2025-02-20T20:43:21Z","timestamp":1740084201000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-642-13131-8_7"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010]]},"ISBN":["9783642131301","9783642131318"],"references-count":22,"URL":"https:\/\/doi.org\/10.1007\/978-3-642-13131-8_7","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2010]]}}}