{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T07:40:25Z","timestamp":1725522025691},"publisher-location":"Berlin, Heidelberg","reference-count":27,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540898931"},{"type":"electronic","value":"9783540898948"}],"license":[{"start":{"date-parts":[[2008,1,1]],"date-time":"2008-01-01T00:00:00Z","timestamp":1199145600000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008]]},"DOI":"10.1007\/978-3-540-89894-8_31","type":"book-chapter","created":{"date-parts":[[2008,12,16]],"date-time":"2008-12-16T10:22:24Z","timestamp":1229422944000},"page":"336-349","source":"Crossref","is-referenced-by-count":3,"title":["Parallel Information Theory Based Construction of Gene Regulatory Networks"],"prefix":"10.1007","author":[{"given":"Jaroslaw","family":"Zola","sequence":"first","affiliation":[]},{"given":"Maneesha","family":"Aluru","sequence":"additional","affiliation":[]},{"given":"Srinivas","family":"Aluru","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"issue":"9","key":"31_CR1","doi-asserted-by":"publisher","first-page":"1010","DOI":"10.1101\/gad.1528707","volume":"21","author":"X. Zhu","year":"2007","unstructured":"Zhu, X., Gerstein, M., Snyder, M.: Getting connected: analysis and principles of biological networks. Genes & development\u00a021(9), 1010\u20131024 (2007)","journal-title":"Genes & development"},{"key":"31_CR2","unstructured":"The chipping forecast II. Special Supplement. Nature Genetics (2002)"},{"issue":"1","key":"31_CR3","doi-asserted-by":"publisher","first-page":"172","DOI":"10.1101\/gr.6984908","volume":"18","author":"T. Torres","year":"2008","unstructured":"Torres, T., Metta, M., Ottenwalder, B., et al.: Gene expression profiling by massively parallel sequencing. Genome research\u00a018(1), 172\u2013177 (2008)","journal-title":"Genome research"},{"key":"31_CR4","unstructured":"Butte, A., Kohane, I.: Unsupervised knowledge discovery in medical databases using relevance networks. In: Proc. of American Medical Informatics Association Symposium, pp. 711\u2013715 (1999)"},{"key":"31_CR5","doi-asserted-by":"crossref","unstructured":"D\u2019haeseleer, P., Wen, X., Fuhrman, S., et al.: Mining the gene expression matrix: Inferring gene relationships from large scale gene expression data. In: Information Processing in Cells and Tissues (1998)","DOI":"10.1007\/978-1-4615-5345-8_22"},{"issue":"18","key":"31_CR6","doi-asserted-by":"publisher","first-page":"3565","DOI":"10.1093\/bioinformatics\/bth445","volume":"20","author":"A. Fuente de la","year":"2004","unstructured":"de la Fuente, A., Bing, N., Hoeschele, I., et al.: Discovery of meaningful associations in genomic data using partial correlation coefficients. Bioinformatics\u00a020(18), 3565\u20133574 (2004)","journal-title":"Bioinformatics"},{"issue":"6","key":"31_CR7","doi-asserted-by":"publisher","first-page":"754","DOI":"10.1093\/bioinformatics\/bti062","volume":"21","author":"J. Schafer","year":"2005","unstructured":"Schafer, J., Strimmer, K.: An empirical Bayes approach to inferring large-scale gene association networks. Bioinformatics\u00a021(6), 754\u2013764 (2005)","journal-title":"Bioinformatics"},{"key":"31_CR8","doi-asserted-by":"publisher","first-page":"601","DOI":"10.1089\/106652700750050961","volume":"7","author":"N. Friedman","year":"2000","unstructured":"Friedman, N., Linial, M., Nachman, I., et al.: Using Bayesian networks to analyze expression data. Journal of Computational Biology\u00a07, 601\u2013620 (2000)","journal-title":"Journal of Computational Biology"},{"key":"31_CR9","unstructured":"Yu, H., Smith, A., Wang, P., et al.: Using Bayesian network inference algorithms to recover molecular genetic regulatory networks. In: Proc. of International Conference on Systems Biology (2002)"},{"key":"31_CR10","doi-asserted-by":"publisher","first-page":"118","DOI":"10.1186\/1471-2105-5-118","volume":"5","author":"C. Daub","year":"2004","unstructured":"Daub, C., Steuer, R., Selbig, J., et al.: Estimating mutual information using B-spline functions \u2013 an improved similarity measure for analysing gene expression data. BMC Bioinformatics\u00a05, 118 (2004)","journal-title":"BMC Bioinformatics"},{"issue":"5","key":"31_CR11","doi-asserted-by":"publisher","first-page":"554","DOI":"10.1038\/nbt0505-554","volume":"23","author":"A. Hartemink","year":"2005","unstructured":"Hartemink, A.: Reverse engineering gene regulatory networks. Nature Biotechnology\u00a023(5), 554\u2013555 (2005)","journal-title":"Nature Biotechnology"},{"issue":"11","key":"31_CR12","doi-asserted-by":"publisher","first-page":"1614","DOI":"10.1101\/gr.6911207","volume":"17","author":"S. Ma","year":"2007","unstructured":"Ma, S., Gong, Q., Bohnert, H.: An Arabidopsis gene network based on the graphical Gaussian model. Genome research\u00a017(11), 1614\u20131625 (2007)","journal-title":"Genome research"},{"issue":"4","key":"31_CR13","doi-asserted-by":"publisher","first-page":"382","DOI":"10.1038\/ng1532","volume":"37","author":"K. Basso","year":"2005","unstructured":"Basso, K., Margolin, A., Stolovitzky, G., et al.: Reverse engineering of regulatory networks in human B cells. Nature Genetics\u00a037(4), 382\u2013390 (2005)","journal-title":"Nature Genetics"},{"key":"31_CR14","unstructured":"Butte, A., Kohane, I.: Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements. In: Pacific Symposium on Biocomputing, pp. 418\u2013429 (2000)"},{"key":"31_CR15","volume-title":"Elements of Information Theory","author":"T. Cover","year":"2006","unstructured":"Cover, T., Thomas, J.: Elements of Information Theory, 2nd edn. Wiley, Chichester (2006)","edition":"2"},{"key":"31_CR16","unstructured":"EMBL-EBI ArrayExpress (last visited) (2008), http:\/\/www.ebi.ac.uk\/microarray-as\/aer\/"},{"key":"31_CR17","unstructured":"NCBI Gene Expression Omnibus (last visited) (2008), http:\/\/www.ncbi.nlm.nih.gov\/geo\/"},{"key":"31_CR18","unstructured":"NASC European Arabidopsis Stock Centre (last visited) (2008), http:\/\/www.arabidopsis.info\/"},{"issue":"23","key":"31_CR19","doi-asserted-by":"publisher","first-page":"238701","DOI":"10.1103\/PhysRevLett.91.238701","volume":"91","author":"E. Schneidman","year":"2003","unstructured":"Schneidman, E., Still, S., Berry, M., et al.: Network information and connected correlations. Physical review letters\u00a091(23), 238701 (2003)","journal-title":"Physical review letters"},{"issue":"2 Pt 2","key":"31_CR20","doi-asserted-by":"publisher","first-page":"26209","DOI":"10.1103\/PhysRevE.76.026209","volume":"76","author":"S. Khan","year":"2007","unstructured":"Khan, S., Bandyopadhyay, S., Ganguly, A., et al.: Relative performance of mutual information estimation methods for quantifying the dependence among short and noisy data. Physical review. E\u00a076(2 Pt 2), 026209 (2007)","journal-title":"Physical review. E"},{"issue":"3","key":"31_CR21","doi-asserted-by":"publisher","first-page":"2318","DOI":"10.1103\/PhysRevE.52.2318","volume":"52","author":"Y. Moon","year":"1995","unstructured":"Moon, Y., Rajagopalan, B., Lall, U.: Estimation of mutual information using kernel density estimators. Physical review. E\u00a052(3), 2318\u20132321 (1995)","journal-title":"Physical review. E"},{"issue":"6 Pt 2","key":"31_CR22","doi-asserted-by":"publisher","first-page":"66138","DOI":"10.1103\/PhysRevE.69.066138","volume":"69","author":"A. Kraskov","year":"2004","unstructured":"Kraskov, A., Stogbauer, H., Grassberger, P.: Estimating mutual information. Physical review. E\u00a069(6 Pt 2), 066138 (2004)","journal-title":"Physical review. E"},{"key":"31_CR23","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4612-6333-3","volume-title":"A practical guide to splines","author":"C. Boor De","year":"1978","unstructured":"De Boor, C.: A practical guide to splines. Springer, Heidelberg (1978)"},{"key":"31_CR24","doi-asserted-by":"publisher","first-page":"43","DOI":"10.1186\/1471-2105-7-43","volume":"7","author":"T. Bulcke Van den","year":"2006","unstructured":"Van den Bulcke, T., Van Leemput, K., Naudts, B., et al.: SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms. BMC Bioinformatics\u00a07, 43 (2006)","journal-title":"BMC Bioinformatics"},{"issue":"3","key":"31_CR25","doi-asserted-by":"publisher","first-page":"818","DOI":"10.1104\/pp.105.072280","volume":"140","author":"S. Palaniswamy","year":"2006","unstructured":"Palaniswamy, S., James, S., Sun, H., et al.: AGRIS and AtRegNet. A platform to link cis-regulatory elements and transcription factors into regulatory networks. Plant physiology\u00a0140(3), 818\u2013829 (2006)","journal-title":"Plant physiology"},{"key":"31_CR26","unstructured":"Statistical algorithms description document (last visited) (2008), http:\/\/www.affymetrix.com\/"},{"key":"31_CR27","doi-asserted-by":"publisher","first-page":"345","DOI":"10.1038\/nmeth756","volume":"2","author":"R. Irizarry","year":"2005","unstructured":"Irizarry, R., Warren, D., Spencer, F., et al.: Multiple-laboratory comparison of microarray platforms. Nature Methods\u00a02, 345\u2013350 (2005)","journal-title":"Nature Methods"}],"container-title":["Lecture Notes in Computer Science","High Performance Computing - HiPC 2008"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-89894-8_31","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,16]],"date-time":"2019-05-16T05:43:28Z","timestamp":1557985408000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-89894-8_31"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008]]},"ISBN":["9783540898931","9783540898948"],"references-count":27,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-89894-8_31","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2008]]}}}