{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T06:05:04Z","timestamp":1725516304289},"publisher-location":"Berlin, Heidelberg","reference-count":18,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540693888"},{"type":"electronic","value":"9783540693895"}],"license":[{"start":{"date-parts":[[2008,1,1]],"date-time":"2008-01-01T00:00:00Z","timestamp":1199145600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2008,1,1]],"date-time":"2008-01-01T00:00:00Z","timestamp":1199145600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008]]},"DOI":"10.1007\/978-3-540-69389-5_16","type":"book-chapter","created":{"date-parts":[[2008,7,31]],"date-time":"2008-07-31T06:39:18Z","timestamp":1217486358000},"page":"130-139","update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":2,"title":["A Streamlined and Generalized Analysis of Chromatin ImmunoPrecipitation Paired-End diTag Data"],"prefix":"10.1007","author":[{"given":"Vinsensius B.","family":"Vega","sequence":"first","affiliation":[]},{"given":"Yijun","family":"Ruan","sequence":"additional","affiliation":[]},{"given":"Wing-Kin","family":"Sung","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"key":"16_CR1","doi-asserted-by":"crossref","first-page":"636","DOI":"10.1126\/science.1105136","volume":"306","author":"ENCODE Project Consortium","year":"2004","unstructured":"ENCODE Project Consortium: The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 306, 636\u2013640 (2004)","journal-title":"Science"},{"key":"16_CR2","doi-asserted-by":"publisher","first-page":"533","DOI":"10.1038\/35054095","volume":"409","author":"V.R. Iyer","year":"2001","unstructured":"Iyer, V.R., Horak, C.E., Scafe, C.S., et al.: Genomic binding sites of the yeast cell-cycle transcription factors sbf and mbf. Nature\u00a0409, 533\u2013538 (2001)","journal-title":"Nature"},{"key":"16_CR3","doi-asserted-by":"publisher","first-page":"2306","DOI":"10.1126\/science.290.5500.2306","volume":"290","author":"B. Ren","year":"2000","unstructured":"Ren, B., Robert, F., Wyrick, J.J., et al.: Genome wide location and function of dna binding proteins. Science\u00a0290, 2306\u20132309 (2000)","journal-title":"Science"},{"key":"16_CR4","doi-asserted-by":"publisher","first-page":"2924","DOI":"10.1073\/pnas.052706999","volume":"99","author":"C.E. Horak","year":"2002","unstructured":"Horak, C.E., Mahajan, M.C., Luscombe, N.M., et al.: GATA-1 binding sites mapped in the \u03b2-globin locus by using mammalian chip-chip analysis. Proceedings of the National Academy of Sciences\u00a099, 2924\u20132929 (2002)","journal-title":"Proceedings of the National Academy of Sciences"},{"key":"16_CR5","doi-asserted-by":"publisher","first-page":"235","DOI":"10.1101\/gad.943102","volume":"16","author":"A.S. Weinmann","year":"2002","unstructured":"Weinmann, A.S., Pearlly, S.Y., Oberley, M.J., et al.: Isolating human transcription factor targets by coupling chromatin immunoprecipitation and cpg island microarray analysis. Genes Dev.\u00a016, 235\u2013244 (2002)","journal-title":"Genes Dev."},{"key":"16_CR6","doi-asserted-by":"publisher","first-page":"6820","DOI":"10.1128\/MCB.21.20.6820-6832.2001","volume":"21","author":"A.S. Weinmann","year":"2001","unstructured":"Weinmann, A.S., Bartley, S.M., Zhang, T., et al.: Use of chromatin immunoprecipitation to clone novel E2F target promoters. Mol. Cell. Biol.\u00a021, 6820\u20136832 (2001)","journal-title":"Mol. Cell. Biol."},{"issue":"2","key":"16_CR7","doi-asserted-by":"publisher","first-page":"825","DOI":"10.1074\/jbc.M309524200","volume":"279","author":"B.A. Hug","year":"2004","unstructured":"Hug, B.A., Ahmed, N., Robbins, J.A., Lazar, M.A.: A chromatin immunoprecipitation screen reveals protein kinase cbeta as a direct runx1 target gene. J. Biol. Chem.\u00a0279(2), 825\u2013830 (2004)","journal-title":"J. Biol. Chem."},{"key":"16_CR8","first-page":"1041","volume":"119","author":"S. Impey","year":"2004","unstructured":"Impey, S., McCorkle, S.R., Cha-Molstad, H., et al.: Defining the creb regulona genome-wide analysis of transcription factor regulatory regions. Cell\u00a0119, 1041\u20131054 (2004)","journal-title":"Cell"},{"issue":"1","key":"16_CR9","doi-asserted-by":"publisher","first-page":"47","DOI":"10.1038\/nmeth726","volume":"2","author":"J. Kim","year":"2004","unstructured":"Kim, J., Bhinge, A.A., Morgan, X.C., Iyer, V.R.: Mapping dna-protein interactions in large genomes by sequence tag analysis of genomic enrichment. Nature Methods\u00a02(1), 47\u201353 (2004)","journal-title":"Nature Methods"},{"issue":"13","key":"16_CR10","doi-asserted-by":"publisher","first-page":"4813","DOI":"10.1073\/pnas.0407069102","volume":"102","author":"J. Chen","year":"2005","unstructured":"Chen, J., Sadowski, I.: Identification of the mismatch repair genes PMS2 and MLH1 as p53 target genes by using serial analysis of binding elements. Proceedings of the National Academy of Sciences\u00a0102(13), 4813\u20134818 (2005)","journal-title":"Proceedings of the National Academy of Sciences"},{"issue":"5","key":"16_CR11","doi-asserted-by":"publisher","first-page":"542","DOI":"10.1101\/gad.1272505","volume":"19","author":"T.Y. Roh","year":"2005","unstructured":"Roh, T.Y., Cuddapah, S., Zhao, K.: Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping. Genes Dev.\u00a019(5), 542\u2013552 (2005)","journal-title":"Genes Dev."},{"issue":"1","key":"16_CR12","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1016\/j.cell.2005.10.043","volume":"124","author":"C.L. Wei","year":"2006","unstructured":"Wei, C.L., Wu, Q., Vega, V.B., et al.: A global map of p53 transcription-factor binding sites in the human genome. Cell\u00a0124(1), 207\u2013219 (2006)","journal-title":"Cell"},{"issue":"4","key":"16_CR13","doi-asserted-by":"publisher","first-page":"431","DOI":"10.1038\/ng1760","volume":"38","author":"Y.H. Loh","year":"2006","unstructured":"Loh, Y.H., Wu, Q., Chew, J.L., Vega, V.B., et al.: The oct4 and nanog transcription network regulates pluripotency in mouse embryonic stem cells. Nature Genetics\u00a038(4), 431\u2013440 (2006)","journal-title":"Nature Genetics"},{"key":"16_CR14","doi-asserted-by":"publisher","first-page":"367","DOI":"10.1098\/rspl.1879.0061","volume":"29","author":"D. McAlister","year":"1879","unstructured":"McAlister, D.: The law of the geometric mean. Proceedings of the Royal Society of London\u00a029, 367\u2013376 (1879)","journal-title":"Proceedings of the Royal Society of London"},{"key":"16_CR15","doi-asserted-by":"publisher","first-page":"218","DOI":"10.1145\/5666.5673","volume":"29","author":"J. Fleming","year":"1986","unstructured":"Fleming, J., Wallace, J.: How not to lie with statistics: the correct way to summarize benchmark results. Communications of the ACM\u00a029, 218\u2013221 (1986)","journal-title":"Communications of the ACM"},{"key":"16_CR16","doi-asserted-by":"crossref","unstructured":"Lin, C.Y., Vega, V.B., Thomsen, J.S., et al.: Whole-genome cartography of estrogen receptor alpha binding sites. PLoS Genet 3(6) (June 2007)","DOI":"10.1371\/journal.pgen.0030087"},{"key":"16_CR17","doi-asserted-by":"crossref","unstructured":"Shadeo, A., Lam, W.L.: Comprehensive copy number profiles of breast cancer cell model genomes. Breast Cancer Res 8(1), R9 (2006)","DOI":"10.1186\/bcr1370"},{"key":"16_CR18","doi-asserted-by":"publisher","first-page":"2905","DOI":"10.1093\/nar\/29.14.2905","volume":"29","author":"C. Klinge","year":"2001","unstructured":"Klinge, C.: Estrogen receptor interaction with estrogen response elements. Nucleic Acids Research\u00a029, 2905\u20132919 (2001)","journal-title":"Nucleic Acids Research"}],"container-title":["Lecture Notes in Computer Science","Computational Science \u2013 ICCS 2008"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-69389-5_16","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,5,9]],"date-time":"2024-05-09T06:43:23Z","timestamp":1715237003000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-540-69389-5_16"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008]]},"ISBN":["9783540693888","9783540693895"],"references-count":18,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-69389-5_16","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2008]]},"assertion":[{"value":"This content has been made available to all.","name":"free","label":"Free to read"}]}}