{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,10]],"date-time":"2024-09-10T15:01:36Z","timestamp":1725980496312},"publisher-location":"Cham","reference-count":23,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319912103"},{"type":"electronic","value":"9783319912110"}],"license":[{"start":{"date-parts":[[2018,6,6]],"date-time":"2018-06-06T00:00:00Z","timestamp":1528243200000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"},{"start":{"date-parts":[[2018,6,6]],"date-time":"2018-06-06T00:00:00Z","timestamp":1528243200000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019]]},"DOI":"10.1007\/978-3-319-91211-0_34","type":"book-chapter","created":{"date-parts":[[2018,6,5]],"date-time":"2018-06-05T08:59:02Z","timestamp":1528189142000},"page":"379-392","update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":3,"title":["Semantic Segmentation of Colon Glands in\u00a0Inflammatory Bowel Disease Biopsies"],"prefix":"10.1007","author":[{"given":"Zhaoxuan","family":"Ma","sequence":"first","affiliation":[]},{"given":"Zaneta","family":"Swiderska-Chadaj","sequence":"additional","affiliation":[]},{"given":"Nathan","family":"Ing","sequence":"additional","affiliation":[]},{"given":"Hootan","family":"Salemi","sequence":"additional","affiliation":[]},{"given":"Dermot","family":"McGovern","sequence":"additional","affiliation":[]},{"given":"Beatrice","family":"Knudsen","sequence":"additional","affiliation":[]},{"given":"Arkadiusz","family":"Gertych","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2018,6,6]]},"reference":[{"key":"34_CR1","unstructured":"Abadi, M., Agarwal, A., Barham, P., Brevdo, E., Chen, Z., Citro, C., Corrado, G.S., Davis, A., Dean, J., Devin, M., Ghemawat, S., Goodfellow, I., Harp, A., Irving, G., Isard, M., Jia, Y., Jozefowicz, R., Kaiser, L., Kudlur, M., Levenberg, J., Man\u00e9, D., Monga, R., Moore, S., Murray, D., Olah, C., Schuster, M., Shlens, J., Steiner, B., Sutskever, I., Talwar, K., Tucker, P., Vanhoucke, V., Vasudevan, V., Vi\u00e9gas, F., Vinyals, O., Warden, P., Wattenberg, M., Wicke, M., Yu, Y., Zheng, X.: TensorFlow: large-scale machine learning on heterogeneous systems (2015)"},{"key":"34_CR2","doi-asserted-by":"publisher","first-page":"460","DOI":"10.1007\/978-3-319-46723-8_53","volume-title":"Medical Image Computing and Computer-Assisted Intervention \u2013 MICCAI 2016","author":"A\u00efcha BenTaieb","year":"2016","unstructured":"BenTaieb, A., Hamarneh, G.: Topology aware fully convolutional networks for histology gland segmentation, pp. 460\u2013468. Springer International Publishing, Cham (2016)"},{"issue":"2\u20133","key":"34_CR3","doi-asserted-by":"publisher","first-page":"61","DOI":"10.1159\/000443482","volume":"83","author":"G Bueno","year":"2016","unstructured":"Bueno, G., Fern\u00e1ndez-Carrobles, M.M., Deniz, O., Garc\u00eda-Rojo, M.: New trends of emerging technologies in digital pathology. Pathobiology 83(2\u20133), 61\u201369 (2016)","journal-title":"Pathobiology"},{"key":"34_CR4","unstructured":"Chollet, F., et\u00a0al.: Keras (2015)"},{"key":"34_CR5","unstructured":"Everingham, M., Van\u00a0Gool, L., Williams, C.K.I., Winn, J., Zisserman, A.: The PASCAL visual object classes challenge 2011 (VOC2011) results. http:\/\/www.pascal-network.org\/challenges\/VOC\/voc2011\/workshop\/index.html"},{"issue":"12","key":"34_CR6","doi-asserted-by":"publisher","first-page":"1005","DOI":"10.1136\/jclinpath-2013-201885","volume":"66","author":"RM Feakins","year":"2013","unstructured":"Feakins, R.M.: Inflammatory bowel disease biopsies: updated british society of gastroenterology reporting guidelines. J. Clin. Pathol. 66(12), 1005\u20131026 (2013)","journal-title":"J. Clin. Pathol."},{"issue":"Part 2","key":"34_CR7","doi-asserted-by":"publisher","first-page":"197","DOI":"10.1016\/j.compmedimag.2015.08.002","volume":"46","author":"A Gertych","year":"2015","unstructured":"Gertych, A., Ing, N., Ma, Z., Fuchs, T.J., Salman, S., Mohanty, S., Bhele, S., Vel\u00e1squez-Vacca, A., Amin, M.B., Knudsen, B.S.: Machine learning approaches to analyze histological images of tissues from radical prostatectomies. Comput. Med. Imaging Graph. 46(Part 2), 197\u2013208 (2015)","journal-title":"Comput. Med. Imaging Graph."},{"key":"34_CR8","doi-asserted-by":"publisher","unstructured":"Ing, N., Ma, Z., Li, J., Salemi, H., Arnold, C., Knudsen, B., Gertych, A.: Semantic segmentation for prostate cancer grading by convolutional neural networks. In: Proceedings of the SPIE Medical Imaging, vol. 10581, pp. 10581-1\u201310581-13 (2018). https:\/\/doi.org\/10.1117\/12.2293000","DOI":"10.1117\/12.2293000"},{"key":"34_CR9","first-page":"193","volume-title":"Advances in Intelligent Systems and Computing","author":"Nathan Ing","year":"2016","unstructured":"Ing, N., Salman, S., Ma, Z., Walts, A., Knudsen, B., Gertych, A.: Machine learning can reliably distinguish histological patterns of micropapillary and solid lung adenocarcinomas. In: Pi\u0119tka, E., Badura, P., Kawa, J., Wieclawek, W. (eds.) Proceedings of the Information Technologies in Medicine: 5th International Conference, ITIB 2016, Kamie\u0144 \u015al\u0105ski, Poland, 20\u201322 June 2016, vol. 2, pp. 193\u2013206. Springer International Publishing, Cham (2016)"},{"key":"34_CR10","doi-asserted-by":"crossref","unstructured":"Jia, Y., Shelhamer, E., Donahue, J., Karayev, S., Long, J., Girshick, R., Guadarrama, S., Darrell, T.: Caffe: convolutional architecture for fast feature embedding. arXiv preprint arXiv:1408.5093 (2014)","DOI":"10.1145\/2647868.2654889"},{"key":"34_CR11","doi-asserted-by":"publisher","first-page":"e3874","DOI":"10.7717\/peerj.3874","volume":"5","author":"P Kainz","year":"2017","unstructured":"Kainz, P., Pfeiffer, M., Urschler, M.: Segmentation and classification of colon glands with deep convolutional neural networks and total variation regularization. PeerJ 5, e3874 (2017)","journal-title":"PeerJ"},{"key":"34_CR12","unstructured":"Kendall, A., Gal, Y.: What uncertainties do we need in Bayesian deep learning for computer vision? arXiv preprint arXiv:1703.04977 (2017)"},{"key":"34_CR13","doi-asserted-by":"crossref","unstructured":"Li, W., Manivannan, S., Akbar, S., Zhang, J., Trucco, E., McKenna, S.: Gland segmentation in colon histology images using hand-crafted features and convolutional neural networks, June 2016, pp. 1405\u20131408. IEEE (2016)","DOI":"10.1109\/ISBI.2016.7493530"},{"key":"34_CR14","doi-asserted-by":"publisher","first-page":"26286","DOI":"10.1038\/srep26286","volume":"6","author":"G Litjens","year":"2016","unstructured":"Litjens, G., S\u00e1nchez, C.I., Timofeeva, N., Hermsen, M., Nagtegaal, I., Kovacs, I., van de Kaa, C.H., Bult, P., van Ginneken, B., van der Laak, J.: Deep learning as a tool for increased accuracy and efficiency of histopathological diagnosis. Sci. Rep. 6, 26286 (2016)","journal-title":"Sci. Rep."},{"key":"34_CR15","doi-asserted-by":"crossref","unstructured":"Litjens, G.J.S., Kooi, T., Bejnordi, B.E., Setio, A.A.A., Ciompi, F., Ghafoorian, M., van\u00a0der Laak, J.A.W.M., van Ginneken, B., S\u00e1nchez, C.I.: A survey on deep learning in medical image analysis. CoRR abs\/1702.05747 (2017)","DOI":"10.1016\/j.media.2017.07.005"},{"key":"34_CR16","doi-asserted-by":"crossref","unstructured":"Long, J., Shelhamer, E., Darrell, T.: Fully convolutional networks for semantic segmentation. In: The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) (2015)","DOI":"10.1109\/CVPR.2015.7298965"},{"key":"34_CR17","first-page":"234","volume-title":"Lecture Notes in Computer Science","author":"Olaf Ronneberger","year":"2015","unstructured":"Ronneberger, O., Fischer, P., Brox, T.: U-net: convolutional networks for biomedical image segmentation. CoRR abs\/1505.04597 (2015). http:\/\/arxiv.org\/abs\/1505.04597"},{"key":"34_CR18","unstructured":"Shelhamer, E., Long, J., Darrell, T.: Fully convolutional networks for semantic segmentation. CoRR abs\/1605.06211 (2016). http:\/\/arxiv.org\/abs\/1605.06211"},{"key":"34_CR19","doi-asserted-by":"publisher","first-page":"489","DOI":"10.1016\/j.media.2016.08.008","volume":"35","author":"K Sirinukunwattana","year":"2017","unstructured":"Sirinukunwattana, K., Pluim, J.P.W., Chen, H., Qi, X., Heng, P.A., Guo, Y.B., Wang, L.Y., Matuszewski, B.J., Bruni, E., Sanchez, U., B\u00f6hm, A., Ronneberger, O., Cheikh, B.B., Racoceanu, D., Kainz, P., Pfeiffer, M., Urschler, M., Snead, D.R.J., Rajpoot, N.M.: Gland segmentation in colon histology images: the glas challenge contest. Med. Image Anal. 35, 489\u2013502 (2017)","journal-title":"Med. Image Anal."},{"issue":"S5","key":"34_CR20","doi-asserted-by":"publisher","first-page":"1128","DOI":"10.1002\/cncr.22010","volume":"107","author":"SL Stewart","year":"2006","unstructured":"Stewart, S.L., Wike, J.M., Kato, I., Lewis, D.R., Michaud, F.: A population-based study of colorectal cancer histology in the united states, 1998\u20132001. Cancer 107(S5), 1128\u20131141 (2006)","journal-title":"Cancer"},{"key":"34_CR21","first-page":"448","volume-title":"Communications in Computer and Information Science","author":"Zaneta Swiderska-Chadaj","year":"2017","unstructured":"Swiderska-Chadaj, Z., Markiewicz, T., Grala, B., Lorent, M., Gertych, A.: A deep learning pipeline to delineate proliferative areas of intracranial tumors in digital slides, pp. 448\u2013458. Springer International Publishing, Cham (2017)"},{"key":"34_CR22","doi-asserted-by":"crossref","unstructured":"Zheng, S., Jayasumana, S., Romera-Paredes, B., Vineet, V., Su, Z., Du, D., Huang, C., Torr, P.H.: Conditional random fields as recurrent neural networks. In: Proceedings of the IEEE International Conference on Computer Vision, pp. 1529\u20131537 (2015)","DOI":"10.1109\/ICCV.2015.179"},{"key":"34_CR23","first-page":"222","volume-title":"Lecture Notes in Computer Science","author":"Yuyin Zhou","year":"2017","unstructured":"Zhou, Y., Xie, L., Fishman, E.K., Yuille, A.L.: Deep supervision for pancreatic cyst segmentation in abdominal CT scans, pp. 222\u2013230. Springer International Publishing, Cham (2017)"}],"container-title":["Advances in Intelligent Systems and Computing","Information Technology in Biomedicine"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-91211-0_34","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,10,19]],"date-time":"2019-10-19T02:40:50Z","timestamp":1571452850000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-91211-0_34"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,6,6]]},"ISBN":["9783319912103","9783319912110"],"references-count":23,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-91211-0_34","relation":{},"ISSN":["2194-5357","2194-5365"],"issn-type":[{"type":"print","value":"2194-5357"},{"type":"electronic","value":"2194-5365"}],"subject":[],"published":{"date-parts":[[2018,6,6]]}}}