{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,9]],"date-time":"2024-09-09T06:49:39Z","timestamp":1725864579626},"publisher-location":"Cham","reference-count":27,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319449432"},{"type":"electronic","value":"9783319449449"}],"license":[{"start":{"date-parts":[[2016,1,1]],"date-time":"2016-01-01T00:00:00Z","timestamp":1451606400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"},{"start":{"date-parts":[[2016,1,1]],"date-time":"2016-01-01T00:00:00Z","timestamp":1451606400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016]]},"DOI":"10.1007\/978-3-319-44944-9_55","type":"book-chapter","created":{"date-parts":[[2016,9,2]],"date-time":"2016-09-02T16:32:13Z","timestamp":1472833933000},"page":"623-633","update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Superclusteroid 2.0: A Web Tool for Processing Big Biological Networks"],"prefix":"10.1007","author":[{"given":"Maria","family":"Tserirzoglou-Thoma","sequence":"first","affiliation":[]},{"given":"Konstantinos","family":"Theofilatos","sequence":"additional","affiliation":[]},{"given":"Eleni","family":"Tsitsouli","sequence":"additional","affiliation":[]},{"given":"Georgios","family":"Panges-Tserres","sequence":"additional","affiliation":[]},{"given":"Christos","family":"Alexakos","sequence":"additional","affiliation":[]},{"given":"Charalampos","family":"Moschopoulos","sequence":"additional","affiliation":[]},{"given":"Georgios","family":"Alexopoulos","sequence":"additional","affiliation":[]},{"given":"Konstantinos","family":"Giannoulis","sequence":"additional","affiliation":[]},{"given":"Spiros","family":"Likothanassis","sequence":"additional","affiliation":[]},{"given":"Seferina","family":"Mavroudi","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2016,9,2]]},"reference":[{"issue":"21","key":"55_CR1","doi-asserted-by":"publisher","first-page":"1010","DOI":"10.1101\/gad.1528707","volume":"2007","author":"X Zhu","year":"2007","unstructured":"Zhu, X., Gerstein, M., Snyder, M.: Getting connected: analysis and principles of biological networks. Genes Dev. 2007(21), 1010\u20131024 (2007)","journal-title":"Genes Dev."},{"key":"55_CR2","doi-asserted-by":"publisher","first-page":"291","DOI":"10.1007\/978-1-60761-987-1_18","volume":"696","author":"M Kohl","year":"2011","unstructured":"Kohl, M., Wiese, S., Warscheid, B.: Cytoscape: software for visualization and analysis of biological networks. data mining in proteomics. Meth. Mol. Biol. 696, 291\u2013303 (2011)","journal-title":"Meth. Mol. Biol."},{"issue":"2","key":"55_CR3","doi-asserted-by":"publisher","first-page":"89","DOI":"10.1049\/iet-syb:20060038","volume":"1","author":"O Mason","year":"2007","unstructured":"Mason, O., Verwoerd, M.: Graph theory and networks in biology. Syst. Biol. IET 1(2), 89\u2013119 (2007)","journal-title":"Syst. Biol. IET"},{"issue":"5643","key":"55_CR4","doi-asserted-by":"publisher","first-page":"249","DOI":"10.1126\/science.1087447","volume":"302","author":"JM Stuart","year":"2003","unstructured":"Stuart, J.M., Segal, E., Koller, D., Kim, S.K.: A gene-coexpression network for global discovery of conserved genetic modules. Science 302(5643), 249\u2013255 (2003)","journal-title":"Science"},{"issue":"7","key":"55_CR5","first-page":"1","volume":"15","author":"S Roy","year":"2014","unstructured":"Roy, S., Bhattacharyya, D.K., Kalita, J.K.: Reconstruction of gene co-expression network from microarray data using local expression patterns. BMC Bioinf. 15(7), 1 (2014)","journal-title":"BMC Bioinf."},{"issue":"13","key":"55_CR6","doi-asserted-by":"publisher","first-page":"1654","DOI":"10.1093\/bioinformatics\/btt202","volume":"29","author":"B Neyshabur","year":"2013","unstructured":"Neyshabur, B., Khadem, A., Hashemifar, S., Arab, S.S.: NETAL: a new graph-based method for global alignment of protein\u2013protein interaction networks. Bioinformatics 29(13), 1654\u20131662 (2013)","journal-title":"Bioinformatics"},{"issue":"suppl. 2","key":"55_CR7","doi-asserted-by":"publisher","first-page":"W444","DOI":"10.1093\/nar\/gkn336","volume":"36","author":"S Broh\u00e9e","year":"2008","unstructured":"Broh\u00e9e, S., Faust, K., Lima-Mendez, G., Sand, O., Vanderstocken, G., Deville, Y., van Helden, J.: NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways. Nucleic Acids Res. 36(suppl. 2), W444\u2013W451 (2008)","journal-title":"Nucleic Acids Res."},{"issue":"suppl. 2","key":"55_CR8","doi-asserted-by":"publisher","first-page":"W452","DOI":"10.1093\/nar\/gkn230","volume":"36","author":"J Reimand","year":"2008","unstructured":"Reimand, J., Tooming, L., Peterson, H., Adler, P., Vilo, J.: GraphWeb: mining heterogeneous biological networks for gene modules with functional significance. Nucleic Acids Res. 36(suppl. 2), W452\u2013W459 (2008)","journal-title":"Nucleic Acids Res."},{"issue":"6","key":"55_CR9","first-page":"1","volume":"10","author":"CN Moschopoulos","year":"2009","unstructured":"Moschopoulos, C.N., Pavlopoulos, G.A., Schneider, R., Likothanassis, S.D., Kossida, S.: GIBA: a clustering tool for detecting protein complexes. BMC Bioinf. 10(6), 1 (2009)","journal-title":"BMC Bioinf."},{"issue":"15","key":"55_CR10","doi-asserted-by":"publisher","first-page":"1994","DOI":"10.1093\/bioinformatics\/btp330","volume":"25","author":"GA Pavlopoulos","year":"2009","unstructured":"Pavlopoulos, G.A., Moschopoulos, C.N., Hooper, S.D., Schneider, R., Kossida, S.: jClust: a clustering and visualization toolbox. Bioinformatics 25(15), 1994\u20131996 (2009)","journal-title":"Bioinformatics"},{"issue":"1","key":"55_CR11","doi-asserted-by":"publisher","first-page":"55","DOI":"10.1385\/MB:31:1:055","volume":"31","author":"Y Zhao","year":"2005","unstructured":"Zhao, Y., Karypis, G.: Data clustering in life sciences. Mol. Biotechnol. 31(1), 55\u201380 (2005)","journal-title":"Mol. Biotechnol."},{"issue":"1","key":"55_CR12","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1471-2105-5-17","volume":"5","author":"Z Hu","year":"2004","unstructured":"Hu, Z., Mellor, J., Wu, J., DeLisi, C.: VisANT: an online visualization and analysis tool for biological interaction data. BMC Bioinf. 5(1), 1 (2004)","journal-title":"BMC Bioinf."},{"issue":"2","key":"55_CR13","doi-asserted-by":"publisher","first-page":"10","DOI":"10.14806\/ej.17.2.239","volume":"17","author":"A Ropodi","year":"2011","unstructured":"Ropodi, A., Sakkos, N., Moschopoulos, C., Magklaras, G., Kossida, S.: Superclusteroid: a web tool dedicated to data processing of protein-protein interaction networks. EMBnet. J. 17(2), 10 (2011)","journal-title":"EMBnet. J."},{"issue":"9","key":"55_CR14","doi-asserted-by":"publisher","first-page":"2443","DOI":"10.1093\/nar\/gkg340","volume":"31","author":"D Bu","year":"2003","unstructured":"Bu, D., Zhao, Y., Cai, L., Xue, H., Zhu, X., Lu, H., Li, G.: Topological structure analysis of the protein\u2013protein interaction network in budding yeast. Nucleic Acids Res. 31(9), 2443\u20132450 (2003)","journal-title":"Nucleic Acids Res."},{"issue":"7","key":"55_CR15","doi-asserted-by":"publisher","first-page":"1575","DOI":"10.1093\/nar\/30.7.1575","volume":"30","author":"AJ Enright","year":"2002","unstructured":"Enright, A.J., Van Dongen, S., Ouzounis, C.A.: An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res. 30(7), 1575\u20131584 (2002)","journal-title":"Nucleic Acids Res."},{"unstructured":"King, A.D.: Graph clustering with restricted neighbourhood search (Doctoral dissertation, University of Toronto) (2004)","key":"55_CR16"},{"doi-asserted-by":"crossref","unstructured":"Hartuv, E., Schmitt, A., Lange, J., Meier-Ewert, S., Lehrach, H., Shamir, R.: An algorithm for clustering cDNAs for gene expression analysis. In: Proceedings of the Third Annual International Conference on Computational Molecular Biology, pp. 188\u2013197. ACM, April 1999","key":"55_CR17","DOI":"10.1145\/299432.299483"},{"issue":"6","key":"55_CR18","doi-asserted-by":"publisher","first-page":"747","DOI":"10.1089\/cmb.2007.R014","volume":"14","author":"M Koyut\u00fcrk","year":"2007","unstructured":"Koyut\u00fcrk, M., Szpankowski, W., Grama, A.: Assessing significance of connectivity and conservation in protein interaction networks. J. Comput. Biol. 14(6), 747\u2013764 (2007)","journal-title":"J. Comput. Biol."},{"unstructured":"Pietriga, E.: Zgrviewer-a 2.5 D graph visualizer for the DOT language (2005)","key":"55_CR19"},{"issue":"3","key":"55_CR20","doi-asserted-by":"publisher","first-page":"181","DOI":"10.1016\/j.artmed.2014.12.012","volume":"63","author":"K Theofilatos","year":"2015","unstructured":"Theofilatos, K., Pavlopoulou, N., Papasavvas, C., Likothanassis, S., Dimitrakopoulos, C., Georgopoulos, E., Mavroudi, S.: Predicting protein complexes from weighted protein\u2013protein interaction graphs with a novel unsupervised methodology: evolutionary enhanced Markov clustering. Artif. Intell. Med. 63(3), 181\u2013189 (2015)","journal-title":"Artif. Intell. Med."},{"doi-asserted-by":"crossref","unstructured":"Moschopoulos, C.N., Pavlopoulos, G.A., Likothanassis, S.D., Kossida, S.: An enhanced Markov clustering method for detecting protein complexes. In: 8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008, pp. 1\u20136. IEEE, October 2008","key":"55_CR21","DOI":"10.1109\/BIBE.2008.4696656"},{"issue":"11","key":"55_CR22","doi-asserted-by":"publisher","first-page":"2498","DOI":"10.1101\/gr.1239303","volume":"13","author":"P Shannon","year":"2003","unstructured":"Shannon, P., Markiel, A., Ozier, O., Baliga, N.S., Wang, J.T., Ramage, D., Ideker, T.: Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13(11), 2498\u20132504 (2003)","journal-title":"Genome Res."},{"issue":"Database issue","key":"55_CR23","first-page":"D497","volume":"38","author":"A Ruepp","year":"2006","unstructured":"Ruepp, A., Weagele, B.: CORUM: the comprehensive resource of mammalian protein complexes\u20142009. Nucleic Acids Res. 38(Database issue), D497\u2013D501 (2006)","journal-title":"Nucleic Acids Res."},{"issue":"1","key":"55_CR24","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1471-2105-7-488","volume":"7","author":"S Brohee","year":"2006","unstructured":"Brohee, S., Van Helden, J.: Evaluation of clustering algorithms for protein-protein interaction networks. BMC Bioinf. 7(1), 1 (2006)","journal-title":"BMC Bioinf."},{"issue":"1","key":"55_CR25","first-page":"15545","volume":"7","author":"ES Lander","year":"2005","unstructured":"Lander, E.S., et al.: Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. PNAS 2005 7(1), 15545\u201315550 (2005)","journal-title":"PNAS 2005"},{"unstructured":"Russell, J., Cohn, R.: Rabbitmq. Book on Demand (2012)","key":"55_CR26"},{"issue":"7084","key":"55_CR27","doi-asserted-by":"publisher","first-page":"631","DOI":"10.1038\/nature04532","volume":"440","author":"AC Gavin","year":"2006","unstructured":"Gavin, A.C., Aloy, P., Grandi, P., Krause, R., Boesche, M., Marzioch, M., Edelmann, A.: Proteome survey reveals modularity of the yeast cell machinery. Nature 440(7084), 631\u2013636 (2006)","journal-title":"Nature"}],"container-title":["IFIP Advances in Information and Communication Technology","Artificial Intelligence Applications and Innovations"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-44944-9_55","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,9,2]],"date-time":"2020-09-02T00:10:53Z","timestamp":1599005453000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-44944-9_55"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016]]},"ISBN":["9783319449432","9783319449449"],"references-count":27,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-44944-9_55","relation":{},"ISSN":["1868-4238","1868-422X"],"issn-type":[{"type":"print","value":"1868-4238"},{"type":"electronic","value":"1868-422X"}],"subject":[],"published":{"date-parts":[[2016]]},"assertion":[{"value":"2 September 2016","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"AIAI","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"IFIP International Conference on Artificial Intelligence Applications and Innovations","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Thessaloniki","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Greece","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2016","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"16 September 2016","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"18 September 2016","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"12","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"aiai2016","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"This content has been made available to all.","name":"free","label":"Free to read"}]}}