{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,1,31]],"date-time":"2024-01-31T16:32:01Z","timestamp":1706718721618},"reference-count":68,"publisher":"Wiley","issue":"3","license":[{"start":{"date-parts":[[2007,7,13]],"date-time":"2007-07-13T00:00:00Z","timestamp":1184284800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J Comput Chem"],"published-print":{"date-parts":[[2008,2]]},"abstract":"Abstract<\/jats:title>The determination of all possible low\u2010lying energy conformers of flexible molecules is of fundamental interest for various applications. It necessitates a reliable conformational search that is able to detect all important minimum structures and calculates the energies on an adequate level of theory. This work presents a strategy to identify low\u2010energy conformers using arginine as an example by means of a force\u2010field based conformational search in combination with high\u2010level geometry optimizations (RI\u2010MP2\/TZVPP+). The methods used for various stages in the conformational search strategy are shown and various pitfalls are discussed. We can show that electronic energies calculated on a DFT level of theory with standard exchange\u2010correlation functionals strongly underestimate the intramolecular stabilization resulting from stacked orientations of the guanidine and carbonyl moiety of arginine due to the deficiency of DFT to describe dispersion effects. In this case by usage of electron correlation methods, low energy conformers comprising stacked arrangements that are counterintuitive become favorable. \u00a9 2007 Wiley Periodicals, Inc. J Comput Chem, 2008<\/jats:p>","DOI":"10.1002\/jcc.20798","type":"journal-article","created":{"date-parts":[[2007,7,13]],"date-time":"2007-07-13T16:16:42Z","timestamp":1184343402000},"page":"407-415","source":"Crossref","is-referenced-by-count":31,"title":["Conformational analysis of arginine in gas phase\u2014A strategy for scanning the potential energy surface effectively"],"prefix":"10.1002","volume":"29","author":[{"given":"Sebastian","family":"Schlund","sequence":"first","affiliation":[]},{"given":"Robert","family":"M\u00fcller","sequence":"additional","affiliation":[]},{"given":"Carsten","family":"Gra\u03b2mann","sequence":"additional","affiliation":[]},{"given":"Bernd","family":"Engels","sequence":"additional","affiliation":[]}],"member":"311","published-online":{"date-parts":[[2007,7,13]]},"reference":[{"key":"e_1_2_5_2_2","author":"Schlund S.","journal-title":"Chem Eur J"},{"key":"e_1_2_5_2_3","doi-asserted-by":"publisher","DOI":"10.1021\/ja052536w"},{"key":"e_1_2_5_3_2","doi-asserted-by":"publisher","DOI":"10.1021\/cr040603j"},{"key":"e_1_2_5_3_3","doi-asserted-by":"publisher","DOI":"10.1016\/S0010-8545(02)00256-4"},{"key":"e_1_2_5_3_4","doi-asserted-by":"publisher","DOI":"10.1016\/S0010-8545(02)00258-8"},{"key":"e_1_2_5_3_5","doi-asserted-by":"publisher","DOI":"10.1039\/b009041g"},{"key":"e_1_2_5_3_6","doi-asserted-by":"publisher","DOI":"10.1016\/S1367-5931(99)00034-4"},{"key":"e_1_2_5_3_7","doi-asserted-by":"publisher","DOI":"10.1016\/S1367-5931(97)80041-5"},{"key":"e_1_2_5_3_8","volume-title":"Supramolecular Chemistry of Anions","author":"Bianchi A.","year":"1997"},{"key":"e_1_2_5_3_9","doi-asserted-by":"publisher","DOI":"10.1021\/cr9603845"},{"key":"e_1_2_5_3_10","doi-asserted-by":"publisher","DOI":"10.1007\/3-540-58800-0_19"},{"key":"e_1_2_5_3_11","doi-asserted-by":"publisher","DOI":"10.1002\/352760572X"},{"key":"e_1_2_5_4_2","doi-asserted-by":"crossref","first-page":"2623","DOI":"10.1039\/a902404b","volume":"2","author":"Maksi\u00e6 Z. B.","year":"1999","journal-title":"J Chem Soc Perkin Trans"},{"key":"e_1_2_5_5_2","doi-asserted-by":"publisher","DOI":"10.1016\/S0009-2614(01)00166-X"},{"key":"e_1_2_5_6_2","doi-asserted-by":"publisher","DOI":"10.1021\/ja011357l"},{"key":"e_1_2_5_7_2","doi-asserted-by":"publisher","DOI":"10.1021\/jp047369l"},{"key":"e_1_2_5_8_2","doi-asserted-by":"publisher","DOI":"10.1021\/ja982991a"},{"key":"e_1_2_5_9_2","doi-asserted-by":"publisher","DOI":"10.1021\/ja992546v"},{"key":"e_1_2_5_10_2","doi-asserted-by":"publisher","DOI":"10.1021\/jp9931307"},{"key":"e_1_2_5_11_2","doi-asserted-by":"publisher","DOI":"10.1021\/ja960041o"},{"key":"e_1_2_5_12_2","doi-asserted-by":"publisher","DOI":"10.1021\/jp013205i"},{"key":"e_1_2_5_13_2","doi-asserted-by":"publisher","DOI":"10.1021\/jp000038y"},{"key":"e_1_2_5_14_2","doi-asserted-by":"publisher","DOI":"10.1021\/cr040603j"},{"key":"e_1_2_5_15_2","doi-asserted-by":"publisher","DOI":"10.1021\/ja00194a035"},{"key":"e_1_2_5_16_2","doi-asserted-by":"publisher","DOI":"10.1002\/(SICI)1096-987X(19991130)20:15<1671::AID-JCC7>3.0.CO;2-Y"},{"key":"e_1_2_5_17_2","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.540120908"},{"key":"e_1_2_5_18_2","unstructured":"Schr\u00f6dinger Inc. 101 SW Main Street Suite 1300 Portland OR 97204."},{"key":"e_1_2_5_19_2","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.540150811"},{"key":"e_1_2_5_20_2","doi-asserted-by":"publisher","DOI":"10.1021\/ja9621760"},{"key":"e_1_2_5_21_2","doi-asserted-by":"publisher","DOI":"10.1002\/(SICI)1096-987X(199604)17:5\/6<490::AID-JCC1>3.0.CO;2-P"},{"key":"e_1_2_5_22_2","unstructured":"TURBOMOLE V5.6 and V.8 since1988"},{"key":"e_1_2_5_22_3","doi-asserted-by":"crossref","first-page":"165","DOI":"10.1016\/0009-2614(89)85118-8","volume":"162","author":"Ahlrichs R.","year":"1998","journal-title":"Chem Phys Letters"},{"key":"e_1_2_5_22_4","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.540100111"},{"key":"e_1_2_5_22_5","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.540140805"},{"key":"e_1_2_5_22_6","doi-asserted-by":"publisher","DOI":"10.1063\/1.469408"},{"key":"e_1_2_5_22_7","doi-asserted-by":"publisher","DOI":"10.1016\/j.cplett.2003.11.080"},{"key":"e_1_2_5_22_8","doi-asserted-by":"publisher","DOI":"10.1007\/s002140050269"},{"key":"e_1_2_5_22_9","doi-asserted-by":"publisher","DOI":"10.1016\/S0009-2614(02)01084-9"},{"key":"e_1_2_5_22_10","doi-asserted-by":"publisher","DOI":"10.1063\/1.1523393"},{"key":"e_1_2_5_22_11","doi-asserted-by":"publisher","DOI":"10.1063\/1.479510"},{"key":"e_1_2_5_22_12","doi-asserted-by":"publisher","DOI":"10.1016\/0009-2614(95)00838-U"},{"key":"e_1_2_5_22_13","doi-asserted-by":"publisher","DOI":"10.1063\/1.467146"},{"key":"e_1_2_5_22_14","doi-asserted-by":"publisher","DOI":"10.1039\/b515623h"},{"key":"e_1_2_5_22_15","doi-asserted-by":"publisher","DOI":"10.1016\/S0009-2614(98)00862-8"},{"key":"e_1_2_5_22_16","doi-asserted-by":"publisher","DOI":"10.1039\/B415208E"},{"key":"e_1_2_5_23_2","doi-asserted-by":"publisher","DOI":"10.1103\/PhysRevA.38.3098"},{"key":"e_1_2_5_23_3","doi-asserted-by":"publisher","DOI":"10.1103\/PhysRevB.37.785"},{"key":"e_1_2_5_23_4","doi-asserted-by":"publisher","DOI":"10.1063\/1.475007"},{"key":"e_1_2_5_23_5","doi-asserted-by":"publisher","DOI":"10.1021\/ja00523a008"},{"key":"e_1_2_5_24_2","doi-asserted-by":"publisher","DOI":"10.1021\/ja011227c"},{"key":"e_1_2_5_24_3","doi-asserted-by":"publisher","DOI":"10.1021\/ja004356m"},{"key":"e_1_2_5_24_4","doi-asserted-by":"publisher","DOI":"10.1021\/ja0531430"},{"key":"e_1_2_5_24_5","doi-asserted-by":"publisher","DOI":"10.1021\/jp0460588"},{"key":"e_1_2_5_25_2","doi-asserted-by":"publisher","DOI":"10.1016\/0009-2614(94)01180-X"},{"key":"e_1_2_5_25_3","doi-asserted-by":"publisher","DOI":"10.1063\/1.466435"},{"key":"e_1_2_5_25_4","doi-asserted-by":"publisher","DOI":"10.1007\/BF01122433"},{"key":"e_1_2_5_26_2","volume-title":"Handbook of Gaussian Basis Sets (Physical Sciences Data; 24)","author":"Poirier R.","year":"1985"},{"key":"e_1_2_5_27_2","volume-title":"MOLPRO, version 2006.1, a package of ab initio programs","author":"Werner H.\u2010J."},{"key":"e_1_2_5_28_2","doi-asserted-by":"publisher","DOI":"10.1063\/1.456153"},{"key":"e_1_2_5_28_3","doi-asserted-by":"publisher","DOI":"10.1016\/S0166-1280(96)80048-0"},{"key":"e_1_2_5_28_4","doi-asserted-by":"publisher","DOI":"10.1063\/1.462569"},{"key":"e_1_2_5_29_2","doi-asserted-by":"publisher","DOI":"10.1021\/ci049671x"},{"key":"e_1_2_5_30_2","doi-asserted-by":"publisher","DOI":"10.1016\/S1093-3263(02)00144-4"},{"key":"e_1_2_5_31_2","doi-asserted-by":"publisher","DOI":"10.1021\/jo048373w"},{"key":"e_1_2_5_31_3","doi-asserted-by":"publisher","DOI":"10.1021\/jp048784g"},{"key":"e_1_2_5_32_2","doi-asserted-by":"publisher","DOI":"10.1002\/cmdc.200600159"},{"key":"e_1_2_5_33_2","volume-title":"Inorganic Chemistry: Principles of Structure and Reactivity","author":"Huheey J. E.","year":"1993"},{"key":"e_1_2_5_33_3","volume-title":"Inorganic Chemistry, a Unified Approach","author":"Porterfield W. W.","year":"1984"}],"container-title":["Journal of Computational Chemistry"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.wiley.com\/onlinelibrary\/tdm\/v1\/articles\/10.1002%2Fjcc.20798","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1002\/jcc.20798","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,10,16]],"date-time":"2023-10-16T21:15:48Z","timestamp":1697490948000},"score":1,"resource":{"primary":{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/10.1002\/jcc.20798"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007,7,13]]},"references-count":68,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2008,2]]}},"alternative-id":["10.1002\/jcc.20798"],"URL":"https:\/\/doi.org\/10.1002\/jcc.20798","archive":["Portico"],"relation":{},"ISSN":["0192-8651","1096-987X"],"issn-type":[{"value":"0192-8651","type":"print"},{"value":"1096-987X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2007,7,13]]}}}