{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,6]],"date-time":"2024-09-06T14:57:24Z","timestamp":1725634644724},"reference-count":49,"publisher":"Wiley","issue":"17","license":[{"start":{"date-parts":[[2011,3,22]],"date-time":"2011-03-22T00:00:00Z","timestamp":1300752000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Concurrency and Computation"],"published-print":{"date-parts":[[2011,12,10]]},"abstract":"SUMMARY<\/jats:title>The Tupelo semantic content management middleware implements Knowledge Spaces that enable scientists to integrate information into a comprehensive research record as they work with existing tools and domain\u2010specific applications. Knowledge Spaces combine approaches that have demonstrated success in automating parts of this integration activity, including content management systems for domain\u2010neutral management of data, workflow technologies for management of computation and analysis, and semantic web technologies for extensible, portable, citable management of descriptive information and other metadata. Tupelo's \u2018Context\u2019 facility and its associated semantic operations both allow existing data representations and tools to be plugged in, and also provide a semantic \u2018glue\u2019 of important associative relationships that span the research record, such as provenance, social networks, and annotation. Tupelo has enabled the recent work creating e\u2010Science cyberenvironments to serve distributed, active scientific communities, allowing researchers to develop, coordinate and share datasets, documents, and computational models, while preserving process documentation and other contextual information needed to produce an integrated research record suitable for distribution and archiving. Copyright \u00a9 2011 John Wiley & Sons, Ltd.<\/jats:p>","DOI":"10.1002\/cpe.1705","type":"journal-article","created":{"date-parts":[[2011,3,22]],"date-time":"2011-03-22T09:11:17Z","timestamp":1300785077000},"page":"2107-2117","source":"Crossref","is-referenced-by-count":6,"title":["Semantic middleware for e\u2010Science knowledge spaces"],"prefix":"10.1002","volume":"23","author":[{"given":"Joe","family":"Futrelle","sequence":"first","affiliation":[]},{"given":"Jeff","family":"Gaynor","sequence":"additional","affiliation":[]},{"given":"Joel","family":"Plutchak","sequence":"additional","affiliation":[]},{"given":"James D.","family":"Myers","sequence":"additional","affiliation":[]},{"given":"Robert E.","family":"McGrath","sequence":"additional","affiliation":[]},{"given":"Peter","family":"Bajcsy","sequence":"additional","affiliation":[]},{"given":"Jason","family":"Kastner","sequence":"additional","affiliation":[]},{"given":"Kailash","family":"Kotwani","sequence":"additional","affiliation":[]},{"given":"Jong Sung","family":"Lee","sequence":"additional","affiliation":[]},{"given":"Luigi","family":"Marini","sequence":"additional","affiliation":[]},{"given":"Rob","family":"Kooper","sequence":"additional","affiliation":[]},{"given":"Terry","family":"McLaren","sequence":"additional","affiliation":[]},{"given":"Yong","family":"Liu","sequence":"additional","affiliation":[]}],"member":"311","published-online":{"date-parts":[[2011,3,22]]},"reference":[{"key":"e_1_2_6_2_2","unstructured":"MyersJD DunningTH.Cyberenvironments and Cyberinfrastructure: Powering Cyber\u2010research in the 21st Century. Foundations of Molecular Modeling and Simulation (FOMMS 2006) Blaine WA U.S.A. 9\u201310 June2006."},{"key":"e_1_2_6_3_2","volume-title":"Ubiquitous Learning","author":"Myers JD","year":"2009"},{"key":"e_1_2_6_4_2","volume-title":"Illuminating the Path: The Research and Development Agenda for Visual Analytics","author":"Thomas JJ","year":"2005"},{"key":"e_1_2_6_5_2","unstructured":"MyersJD MariniL BajcsyP KooperR LiuY McGrathR FutrelleJ McLarenT CollierA RodriguezA.A digital synthesis framework for virtual observatories. AGU 2008 Fall Meeting San Francisco CA U.S.A. 2008"},{"key":"e_1_2_6_6_2","unstructured":"MariniL KooperR FutrelleJ PlutchakJ CraigA McLarenT MyersJ.Medici: A scalable multimedia environment for research (poster). Microsoft E\u2010Science Workshop Berkeley CA U.S.A. 2010."},{"key":"e_1_2_6_7_2","first-page":"5","article-title":"Special issue: The first provenance challenge","volume":"20","author":"Moreau L","year":"2007","journal-title":"Concurrency and Computation: Practice and Experience"},{"key":"e_1_2_6_8_2","doi-asserted-by":"publisher","DOI":"10.1145\/1330311.1330323"},{"key":"e_1_2_6_9_2","doi-asserted-by":"publisher","DOI":"10.1002\/cpe.994"},{"key":"e_1_2_6_10_2","doi-asserted-by":"publisher","DOI":"10.1002\/cpe.993"},{"key":"e_1_2_6_11_2","doi-asserted-by":"publisher","DOI":"10.1109\/MCISE.2003.1196306"},{"key":"e_1_2_6_12_2","unstructured":"LAND PROCESSES DISTRIBUTED ACTIVE ARCHIVE CENTER. MODIS Reprojection Tool 2010. Available at:https:\/\/lpdaac.usgs.gov\/lpdaac\/tools\/modis_reprojection_tool[20 April2010]."},{"key":"e_1_2_6_13_2","unstructured":"Infrared Processing and Analysis Center. Montage: An Astronomical Image Mosaic Engine 2010. Available at:http:\/\/montage.ipac.caltech.edu\/docs\/mProjectPP.html[14 February2010]."},{"key":"e_1_2_6_14_2","doi-asserted-by":"crossref","first-page":"1","DOI":"10.3998\/3336451.0007.104","article-title":"The Deep Web: Surfacing Hidden Value","volume":"7","author":"Bergman MK","year":"2001","journal-title":"Journal of Electronic Publishing"},{"key":"e_1_2_6_15_2","unstructured":"Apache. Jackrabbit 2006. Available at:http:\/\/incubator.apache.org\/jackrabbit\/[4 June2007]."},{"key":"e_1_2_6_16_2","unstructured":"drupal.org. drupal.org | Community Plumbing 2008. Available at:http:\/\/drupal.org\/[24 August2008]."},{"key":"e_1_2_6_17_2","unstructured":"fedora\u2010commons.org. Fedora Commons 2008. Available at:http:\/\/www.fedora\u2010commons.org\/[3 December2008]."},{"key":"e_1_2_6_18_2","unstructured":"dspace.org. dspace.org\u2014Home 2008. Available at:http:\/\/www.dspace.org\/[26 July2008]."},{"key":"e_1_2_6_19_2","unstructured":"MooreR SmithM.Assessment of RLG trusted digital repository requirements. Workshop on \u2018Digital Curation and Trusted Repositories: Seeking Success\u2019 at Joint Conference on Digital Libraries (JCDL 2006) Chapel Hill NC 11\u201315 June 2006."},{"key":"e_1_2_6_20_2","unstructured":"LagozeC Van de SompelH JohnstonP NelsonML SandersonR WarnerS. Open Archives Initative Object Reuse and Exchange (OAI\u2010ORE). Technical Report Open Archives Initative December 2007. Available at:http:\/\/www.openarchives.org\/ore\/0.1\/toc[26 January2008]."},{"key":"e_1_2_6_21_2","doi-asserted-by":"publisher","DOI":"10.1109\/MIS.2004.1265888"},{"key":"e_1_2_6_22_2","doi-asserted-by":"publisher","DOI":"10.1007\/11890850_27"},{"key":"e_1_2_6_23_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.future.2008.06.010"},{"key":"e_1_2_6_24_2","doi-asserted-by":"publisher","DOI":"10.1109\/MCSE.2008.120"},{"key":"e_1_2_6_25_2","series-title":"Provenance and Annotation of Data and Processes (Lecture Notes in Computer Science","first-page":"323","author":"Moreau L","year":"2008"},{"key":"e_1_2_6_26_2","unstructured":"GobleC.e\u2010Science is me\u2010Science: What do Scientists want?Enabling Grid for E\u2010Science Geneva Switzerland 2006."},{"key":"e_1_2_6_27_2","unstructured":"RossS.Digital preservation archival science and methodological foundations for digital libraries. 11th European Conference on Digital Libraries Budapest Hungary 2007."},{"key":"e_1_2_6_28_2","unstructured":"MyersJD FutrelleJ GaynorJ PlutchakJ BajcsyP KastnerJ KotwaniK LeeJS MariniL KooperR McGrathRE McLarenT RodriguezA LiuY. Embedding Data within Knowledge Spaces 2009. Available at:http:\/\/arxiv.org\/abs\/0902.0744v1[14 March2010]."},{"key":"e_1_2_6_29_2","unstructured":"MyersJ MariniL KooperR McLarenT McGrathRE FutrelleJ BajcsyP CollierA LiuY HamptonS.A digital synthesis framework for virtual observatories. UK e\u2010Science All Hands Meeting Edinburgh Scotland 2008."},{"key":"e_1_2_6_30_2","doi-asserted-by":"publisher","DOI":"10.1002\/cpe.572"},{"key":"e_1_2_6_31_2","unstructured":"Prud'hommeauxE SeaborneA. SPARQL Query Language for RDF. W3C 15 January 2008. Available at:http:\/\/www.w3.org\/TR\/rdf\u2010sparql\u2010query\/."},{"key":"e_1_2_6_32_2","unstructured":"JENA 2003. Available at:http:\/\/www.hpl.hp.com\/semweb\/jena.html[24 February2006]."},{"key":"e_1_2_6_33_2","unstructured":"openrdf.org. Sesame 2008. Available at:http:\/\/www.openrdf.org\/[18 September2008]."},{"key":"e_1_2_6_34_2","doi-asserted-by":"crossref","unstructured":"GolandY WhiteheadE FaiziA CarterS JensenD. HTTP Extensions for Distributed Authoring\u2014WEBDAV. IETF 1999.","DOI":"10.17487\/rfc2518"},{"key":"e_1_2_6_35_2","unstructured":"SticklerP. URIQA: The Nokia URI Query Agent Model. Nokia 2004. Available at:http:\/\/swdev.nokia.com\/uriqa\/URIQA.html[20 May2007]."},{"key":"e_1_2_6_36_2","unstructured":"Sun Microsystems Inc. Java SE Security 2009. Available at:http:\/\/java.sun.com\/javase\/technologies\/security\/[4 May2009]."},{"key":"e_1_2_6_37_2","unstructured":"Sun Microsystems. Java SE Desktop Technologies\u2014Java Beans. Available at:http:\/\/java.sun.com\/javase\/technologies\/desktop\/javabeans\/index.jsp[4 May2009]."},{"key":"e_1_2_6_38_2","unstructured":"GarrettJJ. Ajax: A New Approach to Web Applications 2005. Available at:http:\/\/www.adaptivepath.com\/ideas\/essays\/archives\/000385.php[2 February2008]."},{"key":"e_1_2_6_39_2","unstructured":"HorrocksI Patel\u2010SchneiderPF BoleyH TabetS GrosofB DeanM. SWRL: A Semantic Web Rule Language Combining OWL and RuleML. W3C 21 May 2004. Available at:http:\/\/www.w3.org\/Submission\/SWRL\/[18 October2007]."},{"key":"e_1_2_6_40_2","unstructured":"McGrathRE FutrelleJ.Reasoning about Provenance with OWL and SWRL. AAAI 2008 Spring Symposium AI Meets Business Rules and Process Management Stanford CA U.S.A. 2008."},{"key":"e_1_2_6_41_2","doi-asserted-by":"crossref","unstructured":"S\u00e1nchez\u2010Maci\u00e1nA PastorE de L\u00f3pez VergaraJ L\u00f3pezD.Extending SWRL to enhance mathematical support. Web Reasoning and Rule Systems Innsbruck Austria 2007;358\u2013360.","DOI":"10.1007\/978-3-540-72982-2_30"},{"key":"e_1_2_6_42_2","doi-asserted-by":"crossref","unstructured":"KumarVS NarayananS KurcT KongJAKJ GurcanMNAGMN SaltzJHASJH.Analysis and semantic querying in large biomedical image datasets. Computer2008;41(4):52\u201359.","DOI":"10.1109\/MC.2008.108"},{"key":"e_1_2_6_43_2","doi-asserted-by":"publisher","DOI":"10.1145\/191843.191939"},{"key":"e_1_2_6_44_2","unstructured":"McGrathRE KastnerJ RodriguezA MyersJ. Towards a semantic preservation system. National Center for Supercomputing Applications. Available at:http:\/\/arxiv.org\/abs\/0910.3152[16 October2009]."},{"key":"e_1_2_6_45_2","doi-asserted-by":"crossref","unstructured":"LiuY HillD RodriguezA MariniL KooperR MyersJ XiaowenW MinskerB.A new framework for on\u2010demand virtualization repurposing and fusion of heterogeneous sensors. International Symposium on Collaborative Technologies and Systems (CTS'09) Baltimore MA U.S.A. 2009;54\u201363.","DOI":"10.1109\/CTS.2009.5067462"},{"key":"e_1_2_6_46_2","doi-asserted-by":"crossref","unstructured":"LiuY HillDJ RodriguezA MariniL KooperR FutrelleJ MinskerB MyersJD.Near\u2010real\u2010time precipitation virtual sensor using NEXRAD data. Proceedings of the 16th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems Irvine CA U.S.A. 2008.","DOI":"10.1145\/1463434.1463528"},{"key":"e_1_2_6_47_2","unstructured":"RodriguezA McGrathRE LiuY MyersJ.Semantic management of streaming data. Workshop on Semantic Sensor Nets at International Semantic Web Conference Washington DC U.S.A. 2009."},{"key":"e_1_2_6_48_2","unstructured":"iGrow. iGrow Virtual Observatory 2010. Available at:http:\/\/igrow.ncsa.illinois.edu\/[1 January2010]."},{"key":"e_1_2_6_49_2","unstructured":"MariniL KooperR MyersJ BajcsyP.Towards digital watersheds using dynamic publications. Cyberinfrastructure Special Issue of Water Management September2008. ISSN: 1741\u20107589 E\u2010ISSN: 1751\u20107729."},{"issue":"4","key":"e_1_2_6_50_2","first-page":"361","article-title":"WIMOVAC: A software package for modelling the dynamics of plant leaf and canopy photosynthesis","volume":"11","author":"Humphries SW","year":"1995","journal-title":"Computer Applications in the Biosciences"}],"container-title":["Concurrency and Computation: Practice and Experience"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.wiley.com\/onlinelibrary\/tdm\/v1\/articles\/10.1002%2Fcpe.1705","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1002\/cpe.1705","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,10,10]],"date-time":"2023-10-10T12:11:04Z","timestamp":1696939864000},"score":1,"resource":{"primary":{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/10.1002\/cpe.1705"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,3,22]]},"references-count":49,"journal-issue":{"issue":"17","published-print":{"date-parts":[[2011,12,10]]}},"alternative-id":["10.1002\/cpe.1705"],"URL":"https:\/\/doi.org\/10.1002\/cpe.1705","archive":["Portico"],"relation":{},"ISSN":["1532-0626","1532-0634"],"issn-type":[{"value":"1532-0626","type":"print"},{"value":"1532-0634","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,3,22]]}}}